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tRNA:Arg-TCT-1-1 transfer RNA:Arginine-TCT 1-1 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 3772498, updated on 4-Jan-2025

Summary

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Official Symbol
tRNA:Arg-TCT-1-1provided by FlyBase
Official Full Name
transfer RNA:Arginine-TCT 1-1provided by FlyBase
Primary source
FLYBASE:FBgn0050254
Locus tag
Dmel_CR30254
See related
AllianceGenome:FB:FBgn0050254
Gene type
tRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
AE002787.trna23-ArgTCT; AGA; chr2R.trna82-ArgTCT; CR30254; Dmel\CR30254; tRNA-Arg-TCT-1-1; tRNA:CR30254; tRNA:R:TCT:AE002787
Summary
Predicted to enable AGA codon-amino acid adaptor activity. Predicted to be involved in translation. Predicted to be located in cytosol. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See tRNA:Arg-TCT-1-1 in Genome Data Viewer
Location:
48B4-48B4; 2-64 cM
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (11652367..11652439, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (7539872..7539944, complement)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene transfer RNA:Methionine-CAT 1-1 Neighboring gene uncharacterized protein Neighboring gene Regulator of cullins 2 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel TRF1/BRF target genes revealed by genome-wide analysis of Drosophila Pol III transcription. Isogai Y, et al. EMBO J, 2007 Jan 10. PMID 17170711, Free PMC Article
  2. (Differentially) Expressed tRNA-Derived Small RNAs Co-Sediment Primarily with Non-Polysomal Fractions in Drosophila. Göktaş Ç, et al. Genes (Basel), 2017 Nov 20. PMID 29156628, Free PMC Article
  3. tRNA Fragments Populations Analysis in Mutants Affecting tRNAs Processing and tRNA Methylation. Molla-Herman A, et al. Front Genet, 2020. PMID 33193603, Free PMC Article
  4. Integrated tRNA, transcript, and protein profiles in response to steroid hormone signaling. Van Bortle K, et al. RNA, 2015 Oct. PMID 26289344, Free PMC Article
  5. GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes. Chan PP, et al. Nucleic Acids Res, 2016 Jan 4. PMID 26673694, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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  • alternate names: transfer RNA:CR30254
  • tRNA:Arg-TCT-1-1-RA; Dmel\tRNA:Arg-TCT-1-1-RA; CR30254-RA; Dmel\CR30254-RA

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables AGA codon-amino acid adaptor activity ISM
Inferred from Sequence Model
more info
 PubMed 
enables triplet codon-amino acid adaptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IC
Inferred by Curator
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IC
Inferred by Curator
more info
 PubMed 

Gene LinkOut

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