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lncRNA:CR33942 long non-coding RNA:CR33942 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 3771992, updated on 9-Dec-2024

Summary

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Official Symbol
lncRNA:CR33942provided by FlyBase
Official Full Name
long non-coding RNA:CR33942provided by FlyBase
Primary source
FLYBASE:FBgn0062961
Locus tag
Dmel_CR33942
See related
AllianceGenome:FB:FBgn0062961
Gene type
ncRNA
RNA name
lncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:RH09485; CR33942; Dmel\CR33942; lncRNA-CR33942; pncr016; pncr016:2R
Summary
Enables NF-kappaB binding activity and transcription coactivator activity. Involved in positive regulation of signal transduction; positive regulation of transcription by RNA polymerase II; and response to bacterium. Is active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See lncRNA:CR33942 in Genome Data Viewer
Location:
55E9-55E9; 2-86 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (18711391..18711951)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (14598896..14599456)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Salt-inducible kinase 3 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Vacuolar protein sorting 51 Neighboring gene Heparan sulfate 3-O sulfotransferase-A Neighboring gene mir-4982 stem loop Neighboring gene Lithium-inducible SLC6 transporter

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A putative amino acid transporter of the solute carrier 6 family is upregulated by lithium and is required for resistance to lithium toxicity in Drosophila. Kasuya J, et al. Neuroscience, 2009 Oct 20. PMID 19619614, Free PMC Article
  2. Translation and natural selection of micropeptides from long non-canonical RNAs. Patraquim P, et al. Nat Commun, 2022 Oct 31. PMID 36316320, Free PMC Article
  3. Interaction of lncRNA-CR33942 with Dif/Dorsal Facilitates Antimicrobial Peptide Transcriptions and Enhances Drosophila Toll Immune Responses. Zhou H, et al. J Immunol, 2022 Apr 15. PMID 35379744
  4. Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster. Tupy JL, et al. Proc Natl Acad Sci U S A, 2005 Apr 12. PMID 15809421, Free PMC Article
  5. The identification of regulatory ceRNA network involved in Drosophila Toll immune responses. Huang Y, et al. Dev Comp Immunol, 2024 Feb. PMID 38013113

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Interaction of lncRNA-CR33942 with Dif/Dorsal Facilitates Antimicrobial Peptide Transcriptions and Enhances Drosophila Toll Immune Responses.
    Title: Interaction of lncRNA-CR33942 with Dif/Dorsal Facilitates Antimicrobial Peptide Transcriptions and Enhances Drosophila Toll Immune Responses.
Submit: New GeneRIF Correction

General gene information

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  • alternate names: putative noncoding RNA 016:2R
  • lncRNA:CR33942-RA; Dmel\lncRNA:CR33942-RA; CR33942-RA; Dmel\CR33942-RA

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables NF-kappaB binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables transcription coactivator activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to Gram-negative bacterium IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in positive regulation of Toll signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of peptidoglycan recognition protein signaling pathway IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in response to Gram-positive bacterium IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    18711391..18711951
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_002547.2 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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