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MIR170 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 3771565, updated on 11-Sep-2024

Summary

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Official Symbol
MIR170
Primary source
TAIR:AT5G66045
Locus tag
AT5G66045
See related
Araport:AT5G66045
Gene type
ncRNA
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
microRNA170; p_MI0000213
Summary
Encodes a microRNA that targets several SCL family members. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage.Mature sequence: UGAUUGAGCCGUGUCAAUAUC
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Genomic context

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See MIR170 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (26411580..26411672, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Phosphoinositide phosphatase family protein Neighboring gene Golgi-localized GRIP domain-containing protein Neighboring gene sulfurtransferase protein 16 Neighboring gene Wound-responsive family protein Neighboring gene uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Jones-Rhoades MW, et al. Mol Cell, 2004 Jun 18. PMID 15200956

GeneRIFs: Gene References Into Functions

General gene information

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  • mature miRNA accession:MIMAT0000201
  • mature miRNA accession:MIMAT0031887

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within miRNA-mediated post-transcriptional gene silencing TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    26411580..26411672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_143374.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

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Molecular Biology Databases
Research Materials