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RPM1-interacting protein 4 (RIN4) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 3770676, updated on 18-Sep-2024

Summary

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Official Full Name
RPM1-interacting protein 4 (RIN4) family protein
Primary source
TAIR:AT5G19473
Locus tag
AT5G19473
See related
Araport:AT5G19473
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (6569162..6570956)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene nudix hydrolase homolog 20 Neighboring gene nudix hydrolase homolog 24 Neighboring gene mediator of RNA polymerase II transcription subunit Neighboring gene transferases/nucleotidyltransferase Neighboring gene Histone superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001036829.3
NM_001343606.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RPM1-interacting protein 4 (RIN4) family protein
NP_001031906.1
  • RPM1-interacting protein 4 (RIN4) family protein; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09960.1); Has 77 Blast hits to 77 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6569162..6570956
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001036829.3 → NP_001031906.1  RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031906.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8M8, A0A5S9Y5K9, F4K158
    Conserved Domains (1) summary
    pfam05627
    Location:11 → 42
    AvrRpt-cleavage; Cleavage site for pathogenic type III effector avirulence factor Avr

  2. NM_001343606.1 → NP_001332461.1  RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BGZ5
Nucleotide Protein
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