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Concanavalin A-like lectin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 3768781, updated on 18-Sep-2024

Summary

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Official Full Name
Concanavalin A-like lectin family protein
Primary source
TAIR:AT3G09190
Locus tag
AT3G09190
See related
Araport:AT3G09190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F3L24.6
Summary
Regulates flowering time in Ws ecotype.
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Genomic context

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Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_003074.8 (2821448..2822936, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene mediator of RNA polymerase II transcription subunit Neighboring gene Ribosomal protein L10 family protein Neighboring gene plastid transcriptionally active 13 Neighboring gene laccase 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Diversification of photoperiodic response patterns in a collection of early-flowering mutants of Arabidopsis. Pouteau S, et al. Plant Physiol, 2008 Nov. PMID 18799658, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_001161127.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within photoperiodism, flowering IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Concanavalin A-like lectin family protein
NP_001154599.1
  • Concanavalin A-like lectin family protein; FUNCTIONS IN: binding; INVOLVED IN: photoperiodism, flowering; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin family protein (TAIR:AT3G09035.1); Has 755 Blast hits to 752 proteins in 58 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 749; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2821448..2822936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001161127.2 → NP_001154599.1  Concanavalin A-like lectin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154599.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VDH6, F4IZV1
    Conserved Domains (1) summary
    cl14058
    Location:23 → 258
    lectin_L-type; legume lectins
Nucleotide Protein
Heading Accession and Version

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