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RUN/FYVE domain protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 3766692, updated on 18-Sep-2024

Summary

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Official Full Name
RUN/FYVE domain protein
Primary source
TAIR:AT1G10417
Locus tag
AT1G10417
See related
Araport:AT1G10417
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Summary
Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens.
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Genomic context

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Location:
chromosome: 1
Exon count:
12
Sequence:
Chromosome: 1; NC_003070.9 (3424186..3427531, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene CW14 protein (DUF1336) Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene protein phosphatase 2A-2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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NM_001035942.5
NM_001331903.1
NM_001331904.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RUN/FYVE domain protein
NP_001031019.4
  • unknown protein; Has 26006 Blast hits to 16906 proteins in 1326 species: Archae - 433; Bacteria - 3134; Metazoa - 12646; Fungi - 2033; Plants - 1219; Viruses - 58; Other Eukaryotes - 6483 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    3424186..3427531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001331902.1 → NP_001322065.1  RUN/FYVE domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ASU2

  2. NM_001035942.5 → NP_001031019.4  RUN/FYVE domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031019.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9TN69, F4I4C1
    Conserved Domains (1) summary
    COG1196
    Location:81 → 353
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. NM_001331904.1 → NP_001322064.1  RUN/FYVE domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ASY5, A0A5S9TN69

  4. NM_001331903.1 → NP_001322063.1  RUN/FYVE domain protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ASU1
Nucleotide Protein
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