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CG5819 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 37547, updated on 9-Dec-2024

Summary

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Official Symbol
CG5819provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0034717
Locus tag
Dmel_CG5819
See related
AllianceGenome:FB:FBgn0034717
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
5819; CT18212; Dmel\CG5819; tartan/capricious-like
Summary
Is expressed in several structures, including Malpighian tubule primordium; adult head; embryonic/larval midgut primordium; gut section; and proventriculus primordium. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG5819 in Genome Data Viewer
Location:
58D3-58D3; 2-99 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (22293400..22296955)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (18180905..18184460)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene defective proventriculus Neighboring gene long non-coding RNA:CR43422 Neighboring gene windpipe Neighboring gene long non-coding RNA:CR44758

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deletion-generator compound element allows deletion saturation analysis for genomewide phenotypic annotation. Huet F, et al. Proc Natl Acad Sci U S A, 2002 Jul 23. PMID 12096187, Free PMC Article
  2. Systematic imaging reveals features and changing localization of mRNAs in Drosophila development. Jambor H, et al. Elife, 2015 Apr 2. PMID 25838129, Free PMC Article
  3. An extracellular interactome of immunoglobulin and LRR proteins reveals receptor-ligand networks. Özkan E, et al. Cell, 2013 Jul 3. PMID 23827685, Free PMC Article
  4. Hedgehog Signaling Strength Is Orchestrated by the mir-310 Cluster of MicroRNAs in Response to Diet. Çiçek IÖ, et al. Genetics, 2016 Mar. PMID 26801178, Free PMC Article
  5. Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome. MacMillan HA, et al. Sci Rep, 2016 Jun 30. PMID 27357258, Free PMC Article

See all (23) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein
Names
CG5819-PA
CG5819-PB
CG5819-PC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    22293400..22296955
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001259529.2 → NP_001246458.1  uncharacterized protein Dmel_CG5819, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001246458.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7JWP9
    Conserved Domains (4) summary
    smart00082
    Location:471 → 517
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:58 → 236
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:204 → 227
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:273 → 333
    LRR_8; Leucine rich repeat

  2. NM_166523.3 → NP_726186.1  uncharacterized protein Dmel_CG5819, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_726186.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7JWP9
    Related
    FBpp0071725
    Conserved Domains (4) summary
    smart00082
    Location:471 → 517
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:58 → 236
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:204 → 227
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:273 → 333
    LRR_8; Leucine rich repeat

  3. NM_137816.2 → NP_611660.1  uncharacterized protein Dmel_CG5819, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_611660.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7JWP9
    Related
    FBpp0071724
    Conserved Domains (4) summary
    smart00082
    Location:471 → 517
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:58 → 236
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:204 → 227
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:273 → 333
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7JWP9 Q7JWP9

Gene LinkOut

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