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calm1b calmodulin 1b [ Danio rerio (zebrafish) ]

Gene ID: 368217, updated on 9-Dec-2024

Summary

Official Symbol
calm1bprovided by ZNC
Official Full Name
calmodulin 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030804-2
See related
Ensembl:ENSDARG00000034187 AllianceGenome:ZFIN:ZDB-GENE-030804-2
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
CaMbeta-2; zgc:73137
Summary
Is expressed in nervous system; neural plate; neural tube; otic vesicle; and pectoral fin. Human ortholog(s) of this gene implicated in catecholaminergic polymorphic ventricular tachycardia 4 and long QT syndrome 14. Orthologous to human CALM1 (calmodulin 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See calm1b in Genome Data Viewer
Location:
chromosome: 20
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (16743141..16775258)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (16843558..16875675)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103909307 Neighboring gene proteasome 26S subunit, ATPase 1b Neighboring gene BRMS1 like transcriptional repressor b Neighboring gene uncharacterized LOC137488728

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Pathways from PubChem

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200082.1NP_956376.1  calmodulin-1b

    See identical proteins and their annotated locations for NP_956376.1

    Status: PROVISIONAL

    Source sequence(s)
    BC059500
    UniProtKB/Swiss-Prot
    Q4V949, Q6PI52
    UniProtKB/TrEMBL
    B2GQW3
    Related
    ENSDARP00000050307.7, ENSDART00000050308.9
    Conserved Domains (1) summary
    PTZ00184
    Location:1149
    PTZ00184; calmodulin; Provisional

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    16743141..16775258
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)