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R3hdml R3H domain containing-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 366245, updated on 9-Dec-2024

Summary

Official Symbol
R3hdmlprovided by RGD
Official Full Name
R3H domain containing-likeprovided by RGD
Primary source
RGD:1305296
See related
EnsemblRapid:ENSRNOG00000027432 AllianceGenome:RGD:1305296
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be active in extracellular space. Orthologous to human R3HDML (R3H domain containing like). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See R3hdml in Genome Data Viewer
Location:
3q42
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (172590815..172601584)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (152171382..152182151)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (159886248..159898024)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120101779 Neighboring gene ganglioside-induced differentiation-associated protein 1-like 1 Neighboring gene uncharacterized LOC103691964 Neighboring gene fat storage-inducing transmembrane protein 2 Neighboring gene uncharacterized LOC102548241 Neighboring gene hepatocyte nuclear factor 4, alpha Neighboring gene uncharacterized LOC120101780 Neighboring gene ATP synthase membrane subunit c locus 2, pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
peptidase inhibitor R3HDML
Names
R3H domain (binds single-stranded nucleic acids) containing-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108962.1NP_001102432.1  peptidase inhibitor R3HDML precursor

    See identical proteins and their annotated locations for NP_001102432.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474005
    UniProtKB/TrEMBL
    A6JX33, D3ZBM0
    Related
    ENSRNOP00000036301.5, ENSRNOT00000031868.7
    Conserved Domains (1) summary
    cl00133
    Location:65207
    SCP; SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in ...

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    172590815..172601584
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)