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Nup210l nucleoporin 210-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 365844, updated on 9-Dec-2024

Summary

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Official Symbol
Nup210lprovided by RGD
Official Full Name
nucleoporin 210-likeprovided by RGD
Primary source
RGD:1310250
See related
EnsemblRapid:ENSRNOG00000055790 AllianceGenome:RGD:1310250
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310250
Summary
Predicted to act upstream of or within Sertoli cell development and spermatid development. Predicted to be located in membrane. Predicted to be part of nuclear pore. Orthologous to human NUP210L (nucleoporin 210 like). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Testes (RPKM 57.2), Spleen (RPKM 26.4) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Nup210l in Genome Data Viewer
Location:
2q34
Exon count:
42
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (177843647..177962975)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (175545999..175665332)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (189453932..189571918)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 141 Neighboring gene microRNA 190b Neighboring gene tropomyosin 3 Neighboring gene transfer RNA proline (anticodon AGG) 20 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene RNA, U6 small nuclear 278 Neighboring gene ribosomal protein S27 Neighboring gene RAB13, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Mutational insertion of a ROSA26-EGFP transgene leads to defects in spermiogenesis and male infertility in mice. Walters EM, et al. Comp Med, 2009 Dec. PMID 20034429, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
acts_upstream_of_or_within Sertoli cell development ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within spermatid development ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
part_of nuclear pore IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
nuclear pore membrane glycoprotein 210-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191900.2 → NP_001178829.1  nuclear pore membrane glycoprotein 210-like

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000002
    Related
    ENSRNOP00000101046.1, ENSRNOT00000126437.1
    Conserved Domains (2) summary
    pfam02368
    Location:1079 → 1153
    Big_2; Bacterial Ig-like domain (group 2)
    cl02708
    Location:460 → 523
    Big_2; Bacterial Ig-like domain (group 2)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    177843647..177962975
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063282260.1 → XP_063138330.1  nuclear pore membrane glycoprotein 210-like isoform X3

  2. XM_063282264.1 → XP_063138334.1  nuclear pore membrane glycoprotein 210-like isoform X8

  3. XM_063282261.1 → XP_063138331.1  nuclear pore membrane glycoprotein 210-like isoform X4

  4. XM_063282265.1 → XP_063138335.1  nuclear pore membrane glycoprotein 210-like isoform X9

  5. XM_063282268.1 → XP_063138338.1  nuclear pore membrane glycoprotein 210-like isoform X12

  6. XM_063282267.1 → XP_063138337.1  nuclear pore membrane glycoprotein 210-like isoform X11

  7. XM_039102771.2 → XP_038958699.1  nuclear pore membrane glycoprotein 210-like isoform X14

    Conserved Domains (2) summary
    pfam02368
    Location:1079 → 1153
    Big_2; Bacterial Ig-like domain (group 2)
    cl02708
    Location:460 → 523
    Big_2; Bacterial Ig-like domain (group 2)

  8. XM_039102774.2 → XP_038958702.1  nuclear pore membrane glycoprotein 210-like isoform X16

    Conserved Domains (2) summary
    pfam02368
    Location:1079 → 1153
    Big_2; Bacterial Ig-like domain (group 2)
    cl02708
    Location:460 → 523
    Big_2; Bacterial Ig-like domain (group 2)

  9. XM_039102772.2 → XP_038958700.1  nuclear pore membrane glycoprotein 210-like isoform X15

    Conserved Domains (2) summary
    pfam02368
    Location:1079 → 1153
    Big_2; Bacterial Ig-like domain (group 2)
    cl02708
    Location:460 → 523
    Big_2; Bacterial Ig-like domain (group 2)

  10. XM_039102773.2 → XP_038958701.1  nuclear pore membrane glycoprotein 210-like isoform X16

    Conserved Domains (2) summary
    pfam02368
    Location:1079 → 1153
    Big_2; Bacterial Ig-like domain (group 2)
    cl02708
    Location:460 → 523
    Big_2; Bacterial Ig-like domain (group 2)

  11. XM_039102775.2 → XP_038958703.1  nuclear pore membrane glycoprotein 210-like isoform X17

    Conserved Domains (2) summary
    pfam02368
    Location:1079 → 1153
    Big_2; Bacterial Ig-like domain (group 2)
    cl02708
    Location:460 → 523
    Big_2; Bacterial Ig-like domain (group 2)

  12. XM_063282270.1 → XP_063138340.1  nuclear pore membrane glycoprotein 210-like isoform X18

  13. XM_063282258.1 → XP_063138328.1  nuclear pore membrane glycoprotein 210-like isoform X1

  14. XM_063282259.1 → XP_063138329.1  nuclear pore membrane glycoprotein 210-like isoform X2

    UniProtKB/TrEMBL
    D3Z8Z6
    Related
    ENSRNOP00000071641.2, ENSRNOT00000087063.3

  15. XM_063282262.1 → XP_063138332.1  nuclear pore membrane glycoprotein 210-like isoform X5

  16. XM_063282266.1 → XP_063138336.1  nuclear pore membrane glycoprotein 210-like isoform X10

  17. XM_039102765.2 → XP_038958693.1  nuclear pore membrane glycoprotein 210-like isoform X6

    Conserved Domains (2) summary
    pfam02368
    Location:1079 → 1153
    Big_2; Bacterial Ig-like domain (group 2)
    cl02708
    Location:460 → 523
    Big_2; Bacterial Ig-like domain (group 2)

  18. XM_063282263.1 → XP_063138333.1  nuclear pore membrane glycoprotein 210-like isoform X7

  19. XM_063282269.1 → XP_063138339.1  nuclear pore membrane glycoprotein 210-like isoform X13

RNA

  1. XR_010063631.1 RNA Sequence

  2. XR_010063632.1 RNA Sequence

  3. XR_005500328.2 RNA Sequence

  4. XR_005500329.2 RNA Sequence

  5. XR_005500330.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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