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Trappc5 trafficking protein particle complex subunit 5 [ Rattus norvegicus (Norway rat) ]

Gene ID: 363858, updated on 4-Jan-2025

Summary

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Official Symbol
Trappc5provided by RGD
Official Full Name
trafficking protein particle complex subunit 5provided by RGD
Primary source
RGD:1563971
See related
EnsemblRapid:ENSRNOG00000001003 AllianceGenome:RGD:1563971
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1563971
Summary
Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in endoplasmic reticulum. Predicted to be part of TRAPPI protein complex; TRAPPII protein complex; and TRAPPIII protein complex. Orthologous to human TRAPPC5 (trafficking protein particle complex subunit 5). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Kidney (RPKM 83.3), Heart (RPKM 83.0) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Trappc5 in Genome Data Viewer
Location:
12p12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (6535574..6539898)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (1737666..1741312)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (2228670..2232973)

Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene mast cell-expressed membrane protein 1 Neighboring gene foxo1-corepressor-like Neighboring gene Fc epsilon receptor II Neighboring gene C-type lectin domain family 4, member G

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. mBET3 is required for the organization of the TRAPP complexes. Menon S, et al. Biochem Biophys Res Commun, 2006 Nov 24. PMID 17027922
  2. C4orf41 and TTC-15 are mammalian TRAPP components with a role at an early stage in ER-to-Golgi trafficking. Scrivens PJ, et al. Mol Biol Cell, 2011 Jun 15. PMID 21525244, Free PMC Article
  3. Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis. Na CH, et al. J Proteome Res, 2012 Sep 7. PMID 22871113, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of TRAPP complex ISO
Inferred from Sequence Orthology
more info
  
part_of TRAPPI protein complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of TRAPPII protein complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of TRAPPIII protein complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
trafficking protein particle complex subunit 5
Names
trafficking protein particle complex 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108850.2 → NP_001102320.1  trafficking protein particle complex subunit 5

    See identical proteins and their annotated locations for NP_001102320.1

    Status: PROVISIONAL

    Source sequence(s)
    BC158788
    UniProtKB/TrEMBL
    A0A8I5ZRG8, B0BNE3
    Related
    ENSRNOP00000098767.1, ENSRNOT00000154449.1
    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086030.1 Reference GRCr8

    Range
    6535574..6539898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039089624.2 → XP_038945552.1  trafficking protein particle complex subunit 5 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZRG8, B0BNE3
    Related
    ENSRNOP00000001327.3, ENSRNOT00000001327.8
    Conserved Domains (1) summary
    cd14943
    Location:24 → 175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex
Nucleotide Protein Strain
Heading Accession and Version

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