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Rnf214 ring finger protein 214 [ Rattus norvegicus (Norway rat) ]

Gene ID: 363056, updated on 9-Dec-2024

Summary

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Official Symbol
Rnf214provided by RGD
Official Full Name
ring finger protein 214provided by RGD
Primary source
RGD:1307500
See related
EnsemblRapid:ENSRNOG00000017151 AllianceGenome:RGD:1307500
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1307500
Summary
Predicted to enable metal ion binding activity. Orthologous to human RNF214 (ring finger protein 214). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Brain (RPKM 127.1), Heart (RPKM 109.6) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Rnf214 in Genome Data Viewer
Location:
8q22
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (55057434..55098753, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (46166269..46202048, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (50164116..50199988, complement)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene DS cell adhesion molecule-like 1 Neighboring gene centrosomal protein 164 Neighboring gene beta-secretase 1 Neighboring gene proprotein convertase subtilisin/kexin type 7 Neighboring gene transgelin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-protein transferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
RING finger protein 214

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    55057434..55098753 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063266393.1 → XP_063122463.1  RING finger protein 214 isoform X4

    UniProtKB/TrEMBL
    A6J456

  2. XM_063266391.1 → XP_063122461.1  RING finger protein 214 isoform X3

    UniProtKB/TrEMBL
    D4A3V4

  3. XM_063266386.1 → XP_063122456.1  RING finger protein 214 isoform X2

    UniProtKB/TrEMBL
    A6J457, A6J458
    Related
    ENSRNOP00000100787.1, ENSRNOT00000146136.1

  4. XM_008766184.4 → XP_008764406.1  RING finger protein 214 isoform X1

    See identical proteins and their annotated locations for XP_008764406.1

    UniProtKB/TrEMBL
    A0A8I6AH44
    Related
    ENSRNOP00000023459.9, ENSRNOT00000023459.10
    Conserved Domains (1) summary
    cd16477
    Location:656 → 700
    RING-H2_RNF214; RING finger, H2 subclass, found in RING finger protein 214 (RNF214) and similar proteins

  5. XM_017596024.3 → XP_017451513.1  RING finger protein 214 isoform X4

    UniProtKB/TrEMBL
    A6J456
    Conserved Domains (1) summary
    pfam13639
    Location:463 → 509
    zf-RING_2; Ring finger domain

  6. XM_008766187.4 → XP_008764409.1  RING finger protein 214 isoform X3

    See identical proteins and their annotated locations for XP_008764409.1

    UniProtKB/TrEMBL
    D4A3V4
    Conserved Domains (1) summary
    pfam13639
    Location:498 → 544
    zf-RING_2; Ring finger domain

  7. XM_003750501.6 → XP_003750549.1  RING finger protein 214 isoform X2

    See identical proteins and their annotated locations for XP_003750549.1

    UniProtKB/TrEMBL
    A6J457, A6J458
    Related
    ENSRNOP00000094141.2, ENSRNOT00000096135.2
    Conserved Domains (1) summary
    pfam13639
    Location:618 → 664
    zf-RING_2; Ring finger domain

  8. XM_008766183.4 → XP_008764405.1  RING finger protein 214 isoform X1

    See identical proteins and their annotated locations for XP_008764405.1

    UniProtKB/TrEMBL
    A0A8I6AH44
    Conserved Domains (1) summary
    cd16477
    Location:656 → 700
    RING-H2_RNF214; RING finger, H2 subclass, found in RING finger protein 214 (RNF214) and similar proteins

  9. XM_063266387.1 → XP_063122457.1  RING finger protein 214 isoform X2

    UniProtKB/TrEMBL
    A6J457, A6J458

  10. XM_008766185.4 → XP_008764407.1  RING finger protein 214 isoform X1

    See identical proteins and their annotated locations for XP_008764407.1

    UniProtKB/TrEMBL
    A0A8I6AH44
    Conserved Domains (1) summary
    cd16477
    Location:656 → 700
    RING-H2_RNF214; RING finger, H2 subclass, found in RING finger protein 214 (RNF214) and similar proteins

  11. XM_063266394.1 → XP_063122464.1  RING finger protein 214 isoform X4

    UniProtKB/TrEMBL
    A6J456

  12. XM_063266392.1 → XP_063122462.1  RING finger protein 214 isoform X3

    UniProtKB/TrEMBL
    D4A3V4

  13. XM_063266385.1 → XP_063122455.1  RING finger protein 214 isoform X1

    UniProtKB/TrEMBL
    A0A8I6AH44

  14. XM_063266388.1 → XP_063122458.1  RING finger protein 214 isoform X2

    UniProtKB/TrEMBL
    A6J457, A6J458

  15. XM_063266390.1 → XP_063122460.1  RING finger protein 214 isoform X3

    UniProtKB/TrEMBL
    D4A3V4

  16. XM_039082807.2 → XP_038938735.1  RING finger protein 214 isoform X1

    UniProtKB/TrEMBL
    A0A8I6AH44
    Conserved Domains (1) summary
    cd16477
    Location:656 → 700
    RING-H2_RNF214; RING finger, H2 subclass, found in RING finger protein 214 (RNF214) and similar proteins

  17. XM_063266395.1 → XP_063122465.1  RING finger protein 214 isoform X5

  18. XM_063266396.1 → XP_063122466.1  RING finger protein 214 isoform X6

Nucleotide Protein Strain
Heading Accession and Version

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