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Eva1b eva-1 homolog B [ Rattus norvegicus (Norway rat) ]

Gene ID: 362597, updated on 4-Jan-2025

Summary

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Official Symbol
Eva1bprovided by RGD
Official Full Name
eva-1 homolog Bprovided by RGD
Primary source
RGD:1308876
See related
EnsemblRapid:ENSRNOG00000024818 AllianceGenome:RGD:1308876
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Fam176b; RGD1308876
Summary
Predicted to be located in membrane. Orthologous to human EVA1B (eva-1 homolog B). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Lung (RPKM 214.9), Spleen (RPKM 142.8) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Eva1b in Genome Data Viewer
Location:
5q36
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (143711627..143716963)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (138427088..138429602)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (144160026..144161421)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene serine/threonine kinase 40 Neighboring gene uncharacterized LOC108351032 Neighboring gene SH3 domain containing 21 Neighboring gene thyroid hormone receptor associated protein 3 Neighboring gene uncharacterized LOC120103176

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein eva-1 homolog B
Names
family with sequence similarity 176, member B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108679.3 → NP_001102149.2  protein eva-1 homolog B isoform 1

    See identical proteins and their annotated locations for NP_001102149.2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000005
    UniProtKB/TrEMBL
    B2RZB3
    Related
    ENSRNOP00000059335.1, ENSRNOT00000064972.3
    Conserved Domains (1) summary
    pfam14851
    Location:85 → 213
    FAM176; FAM176 family

  2. NM_001399219.1 → NP_001386148.1  protein eva-1 homolog B isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000005
    UniProtKB/TrEMBL
    A6IS94
    Conserved Domains (1) summary
    pfam14851
    Location:7 → 161
    FAM176; FAM176 family

  3. NM_001399220.1 → NP_001386149.1  protein eva-1 homolog B isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000005
    UniProtKB/TrEMBL
    A6IS94
    Conserved Domains (1) summary
    pfam14851
    Location:7 → 161
    FAM176; FAM176 family

RNA

  1. NR_174171.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000005

  2. NR_174172.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000005

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    143711627..143716963
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006238889.3 → XP_006238951.1  protein eva-1 homolog B isoform X1

    See identical proteins and their annotated locations for XP_006238951.1

    UniProtKB/TrEMBL
    B2RZB3
    Conserved Domains (1) summary
    pfam14851
    Location:85 → 213
    FAM176; FAM176 family

RNA

  1. XR_005504490.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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