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Svs6 seminal vesicle secretory protein 6 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362267, updated on 4-Jan-2025

Summary

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Symbol
Svs6provided by RGD
Full Name
seminal vesicle secretory protein 6provided by RGD
Primary source
RGD:1311054
See related
EnsemblRapid:ENSRNOG00000026346 AllianceGenome:RGD:1311054
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Svp6
Summary
Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Jan 2025]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Svs6 in Genome Data Viewer
Location:
3q42
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (173391856..173399363)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (152978315..152979986)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (160695888..160697559)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134486476 Neighboring gene seminal vesicle secretory protein 4 Neighboring gene seminal vesicle secretory protein 3A Neighboring gene seminal vesicle secretory protein 5 Neighboring gene antileukoproteinase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Structure of the androgen dependent SVS VI protein as derived from cDNA. Schifman AL, et al. Mol Cell Endocrinol, 1988 Sep. PMID 2848738
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
seminal vesicle secretory protein 6
Names
seminal vesicle secretion 6
seminal vesicle secretory protein VI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102403.1 → NP_001095873.1  seminal vesicle secretory protein 6 precursor

    See identical proteins and their annotated locations for NP_001095873.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474005
    UniProtKB/TrEMBL
    A6JX73, D3ZJA4
    Related
    ENSRNOP00000018510.5, ENSRNOT00000018510.8

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    173391856..173399363
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063284214.1 → XP_063140284.1  seminal vesicle secretory protein 6 isoform X1

  2. XM_063284215.1 → XP_063140285.1  seminal vesicle secretory protein 6 isoform X1

  3. XM_063284216.1 → XP_063140286.1  seminal vesicle secretory protein 6 isoform X2

  4. XM_063284217.1 → XP_063140287.1  seminal vesicle secretory protein 6 isoform X2

    UniProtKB/TrEMBL
    A6JX73, D3ZJA4
Nucleotide Protein Strain
Heading Accession and Version

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