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Ankrd55 ankyrin repeat domain 55 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361898, updated on 4-Jan-2025

Summary

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Official Symbol
Ankrd55provided by RGD
Official Full Name
ankyrin repeat domain 55provided by RGD
Primary source
RGD:1307735
See related
EnsemblRapid:ENSRNOG00000013555 AllianceGenome:RGD:1307735
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1307735
Summary
Predicted to be located in cytoplasm. Orthologous to human ANKRD55 (ankyrin repeat domain 55). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Testes (RPKM 21.8), Brain (RPKM 20.9) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ankrd55 in Genome Data Viewer
Location:
2q14
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (45617011..45717086)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (43883877..43983820)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (43819234..44196602)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134485837 Neighboring gene uncharacterized LOC102554307 Neighboring gene uncharacterized LOC103691456 Neighboring gene uncharacterized LOC120100706 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC134485838 Neighboring gene interleukin 6 cytokine family signal transducer

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Rat Mcs1b is concordant to the genome-wide association-identified breast cancer risk locus at human 5q11.2 and MIER3 is a candidate cancer susceptibility gene. denDekker AD, et al. Cancer Res, 2012 Nov 15. PMID 22993404, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 55

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001270039.1 → NP_001256968.1  ankyrin repeat domain-containing protein 55

    See identical proteins and their annotated locations for NP_001256968.1

    Status: PROVISIONAL

    Source sequence(s)
    JQ013731
    UniProtKB/TrEMBL
    H9BFG5
    Conserved Domains (2) summary
    PHA03095
    Location:3 → 286
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:64 → 95
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    45617011..45717086
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039102572.2 → XP_038958500.2  ankyrin repeat domain-containing protein 55 isoform X11

  2. XM_006231940.5 → XP_006232002.1  ankyrin repeat domain-containing protein 55 isoform X1

    UniProtKB/TrEMBL
    F1M1X7
    Related
    ENSRNOP00000018438.6, ENSRNOT00000018438.9
    Conserved Domains (4) summary
    cd00204
    Location:121 → 250
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:98 → 192
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:197 → 250
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:93 → 124
    ANK; ANK repeat [structural motif]

  3. XM_039102573.2 → XP_038958501.1  ankyrin repeat domain-containing protein 55 isoform X12

    Conserved Domains (2) summary
    sd00045
    Location:60 → 91
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:65 → 159
    Ank_2; Ankyrin repeats (3 copies)

  4. XM_063282033.1 → XP_063138103.1  ankyrin repeat domain-containing protein 55 isoform X4

    UniProtKB/TrEMBL
    A0A8I6AJZ0

  5. XM_063282034.1 → XP_063138104.1  ankyrin repeat domain-containing protein 55 isoform X4

    UniProtKB/TrEMBL
    A0A8I6AJZ0

  6. XM_039102558.2 → XP_038958486.1  ankyrin repeat domain-containing protein 55 isoform X2

    Related
    ENSRNOP00000095577.2, ENSRNOT00000098621.2
    Conserved Domains (2) summary
    PHA03095
    Location:4 → 298
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:76 → 107
    ANK; ANK repeat [structural motif]

  7. XM_039102563.2 → XP_038958491.1  ankyrin repeat domain-containing protein 55 isoform X4

    UniProtKB/TrEMBL
    A0A8I6AJZ0
    Conserved Domains (2) summary
    PHA03095
    Location:3 → 286
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:64 → 95
    ANK; ANK repeat [structural motif]

  8. XM_039102560.2 → XP_038958488.1  ankyrin repeat domain-containing protein 55 isoform X4

    UniProtKB/TrEMBL
    A0A8I6AJZ0
    Conserved Domains (2) summary
    PHA03095
    Location:3 → 286
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:64 → 95
    ANK; ANK repeat [structural motif]

  9. XM_039102561.2 → XP_038958489.1  ankyrin repeat domain-containing protein 55 isoform X4

    UniProtKB/TrEMBL
    A0A8I6AJZ0
    Conserved Domains (2) summary
    PHA03095
    Location:3 → 286
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:64 → 95
    ANK; ANK repeat [structural motif]

  10. XM_039102565.2 → XP_038958493.1  ankyrin repeat domain-containing protein 55 isoform X4

    UniProtKB/TrEMBL
    A0A8I6AJZ0
    Conserved Domains (2) summary
    PHA03095
    Location:3 → 286
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:64 → 95
    ANK; ANK repeat [structural motif]

  11. XM_039102562.2 → XP_038958490.1  ankyrin repeat domain-containing protein 55 isoform X4

    UniProtKB/TrEMBL
    A0A8I6AJZ0
    Conserved Domains (2) summary
    PHA03095
    Location:3 → 286
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:64 → 95
    ANK; ANK repeat [structural motif]

  12. XM_039102559.2 → XP_038958487.1  ankyrin repeat domain-containing protein 55 isoform X3

    Conserved Domains (2) summary
    PHA03095
    Location:3 → 297
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:75 → 106
    ANK; ANK repeat [structural motif]

  13. XM_039102566.1 → XP_038958494.1  ankyrin repeat domain-containing protein 55 isoform X5

    Conserved Domains (2) summary
    PHA03095
    Location:3 → 286
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:64 → 95
    ANK; ANK repeat [structural motif]

  14. XM_039102571.1 → XP_038958499.1  ankyrin repeat domain-containing protein 55 isoform X10

    Conserved Domains (2) summary
    PHA03095
    Location:3 → 286
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:64 → 95
    ANK; ANK repeat [structural motif]

  15. XM_039102570.2 → XP_038958498.1  ankyrin repeat domain-containing protein 55 isoform X9

    Conserved Domains (2) summary
    COG0666
    Location:21 → 165
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:28 → 59
    ANK; ANK repeat [structural motif]

  16. XM_039102569.2 → XP_038958497.1  ankyrin repeat domain-containing protein 55 isoform X8

    Conserved Domains (2) summary
    COG0666
    Location:27 → 171
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:34 → 65
    ANK; ANK repeat [structural motif]

  17. XM_039102568.2 → XP_038958496.1  ankyrin repeat domain-containing protein 55 isoform X7

    Conserved Domains (2) summary
    COG0666
    Location:40 → 184
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:47 → 78
    ANK; ANK repeat [structural motif]

  18. XM_039102567.2 → XP_038958495.1  ankyrin repeat domain-containing protein 55 isoform X6

    Conserved Domains (2) summary
    COG0666
    Location:47 → 191
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:54 → 85
    ANK; ANK repeat [structural motif]

RNA

  1. XR_005500312.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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