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CG30020 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 36156, updated on 9-Dec-2024

Summary

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Official Symbol
CG30020provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0050020
Locus tag
Dmel_CG30020
See related
AllianceGenome:FB:FBgn0050020
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BEST:LD40262; CG12941; CG18353; Dmel\CG30020; p190
Summary
Enables DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be active in nucleus. Is expressed in organism. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG30020 in Genome Data Viewer
Location:
47C5-47C5; 2-63 cM
Exon count:
13
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (10886810..10893191)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (6774315..6780696)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Hydroxyacid oxidase Neighboring gene uncharacterized protein Neighboring gene mir-1008 stem loop Neighboring gene cag Neighboring gene uncharacterized protein Neighboring gene NADH dehydrogenase (ubiquinone) B14 subunit Neighboring gene RNA polymerase II, I and III subunit E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A transcriptional network controlling glial development in the Drosophila visual system. Bauke AC, et al. Development, 2015 Jun 15. PMID 26015542
  2. Global analysis of target genes of 21 members of the ZAD transcription factor family in Drosophila melanogaster. Krystel J, et al. Gene, 2013 Jan 10. PMID 23085320, Free PMC Article
  3. TRF2 associates with DREF and directs promoter-selective gene expression in Drosophila. Hochheimer A, et al. Nature, 2002 Nov 28. PMID 12459787
  4. An RNA-interference screen in Drosophila to identify ZAD-containing C2H2 zinc finger genes that function in female germ cells. Shapiro-Kulnane L, et al. G3 (Bethesda), 2021 Jan 18. PMID 33561227, Free PMC Article
  5. ZAD-Domain Is Essential for Nuclear Localization of Insulator Proteins in Drosophila melanogaster. Zolotarev NA, et al. Acta Naturae, 2016 Jul-Sep. PMID 27795848, Free PMC Article

See all (31) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific ISS
Inferred from Sequence or Structural Similarity
more info
  
enables transcription cis-regulatory region binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG30020-PA
CG30020-PC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    10886810..10893191
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_136783.3 → NP_610627.2  uncharacterized protein Dmel_CG30020, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_610627.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7JQY8
    Related
    FBpp0087330
    Conserved Domains (2) summary
    sd00017
    Location:1180 → 1203
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam07776
    Location:25 → 106
    zf-AD; Zinc-finger associated domain (zf-AD)

  2. NM_001273946.1 → NP_001260875.1  uncharacterized protein Dmel_CG30020, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001260875.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KEI8
    Conserved Domains (2) summary
    sd00017
    Location:1141 → 1164
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam07776
    Location:25 → 106
    zf-AD; Zinc-finger associated domain (zf-AD)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0B4KEI8 A0A0B4KEI8
Q7JQY8 Q7JQY8
Q8T032 Q8T032

Gene LinkOut

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