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Ccdc28a coiled-coil domain containing 28A [ Rattus norvegicus (Norway rat) ]

Gene ID: 361454, updated on 4-Jan-2025

Summary

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Official Symbol
Ccdc28aprovided by RGD
Official Full Name
coiled-coil domain containing 28Aprovided by RGD
Primary source
RGD:1310326
See related
EnsemblRapid:ENSRNOG00000053347 AllianceGenome:RGD:1310326
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1310326
Summary
Orthologous to human CCDC28A (coiled-coil domain containing 28A). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Heart (RPKM 40.7), Thymus (RPKM 36.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ccdc28a in Genome Data Viewer
Location:
1p12
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (14677451..14692729, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (12857668..12872944, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (13384153..13395643, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene ABRA C-terminal like Neighboring gene RALBP1 associated Eps domain containing 1 Neighboring gene epithelial cell transforming 2 like Neighboring gene uncharacterized LOC102549233 Neighboring gene uncharacterized LOC102549339

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC116395

General protein information

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Preferred Names
coiled-coil domain-containing protein 28A
Names
chemokine C-C motif receptor-like 1 adjacent

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037789.1 → NP_001032878.1  coiled-coil domain-containing protein 28A

    See identical proteins and their annotated locations for NP_001032878.1

    Status: PROVISIONAL

    Source sequence(s)
    BC100268
    UniProtKB/TrEMBL
    Q498D0
    Related
    ENSRNOP00000069590.3, ENSRNOT00000085519.3
    Conserved Domains (1) summary
    pfam13270
    Location:83 → 168
    DUF4061; Domain of unknown function (DUF4061)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    14677451..14692729 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063266008.1 → XP_063122078.1  coiled-coil domain-containing protein 28A isoform X3

    UniProtKB/TrEMBL
    Q498D0

  2. XM_039081106.2 → XP_038937034.1  coiled-coil domain-containing protein 28A isoform X1

    UniProtKB/TrEMBL
    A0A0G2JVR7
    Conserved Domains (1) summary
    pfam13270
    Location:83 → 166
    DUF4061; Domain of unknown function (DUF4061)

  3. XM_063266007.1 → XP_063122077.1  coiled-coil domain-containing protein 28A isoform X3

    UniProtKB/TrEMBL
    Q498D0

  4. XM_063265998.1 → XP_063122068.1  coiled-coil domain-containing protein 28A isoform X1

    UniProtKB/TrEMBL
    A0A0G2JVR7

  5. XM_039081103.2 → XP_038937031.1  coiled-coil domain-containing protein 28A isoform X1

    UniProtKB/TrEMBL
    A0A0G2JVR7
    Conserved Domains (1) summary
    pfam13270
    Location:83 → 166
    DUF4061; Domain of unknown function (DUF4061)

  6. XM_063266001.1 → XP_063122071.1  coiled-coil domain-containing protein 28A isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZQU5

  7. XM_006227660.5 → XP_006227722.1  coiled-coil domain-containing protein 28A isoform X2

    See identical proteins and their annotated locations for XP_006227722.1

    UniProtKB/TrEMBL
    A0A8I5ZQU5
    Related
    ENSRNOP00000080779.1, ENSRNOT00000106151.2
    Conserved Domains (1) summary
    pfam13270
    Location:83 → 159
    DUF4061; Domain of unknown function (DUF4061)
Nucleotide Protein Strain
Heading Accession and Version

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