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Lrrc36 leucine rich repeat containing 36 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361394, updated on 4-Jan-2025

Summary

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Official Symbol
Lrrc36provided by RGD
Official Full Name
leucine rich repeat containing 36provided by RGD
Primary source
RGD:1303118
See related
EnsemblRapid:ENSRNOG00000016854 AllianceGenome:RGD:1303118
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Xlhsrf2
Summary
Orthologous to human LRRC36 (leucine rich repeat containing 36). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Testes (RPKM 69.9), Lung (RPKM 38.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Lrrc36 in Genome Data Viewer
Location:
19q12
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (50201944..50252338)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (33292074..33342426)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (37370469..37439048)

Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 9 member A5 Neighboring gene pleckstrin homology and RhoGEF domain containing G4 Neighboring gene potassium channel tetramerization domain containing 19 Neighboring gene tubulin polymerization-promoting protein family member 3 Neighboring gene zinc finger, DHHC-type containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
leucine-rich repeat-containing protein 36
Names
LRRC36 homolog
heat shock regulated 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004088.3 → NP_001004088.3  leucine-rich repeat-containing protein 36

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000019
    UniProtKB/TrEMBL
    A0A8I6GH65
    Related
    ENSRNOP00000088526.1, ENSRNOT00000022622.7
    Conserved Domains (3) summary
    cd00116
    Location:42 → 107
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:26 → 51
    LRR_1; leucine-rich repeat [structural motif]
    pfam13855
    Location:26 → 84
    LRR_8; Leucine rich repeat

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086037.1 Reference GRCr8

    Range
    50201944..50252338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063278122.1 → XP_063134192.1  leucine-rich repeat-containing protein 36 isoform X1

  2. XM_063278123.1 → XP_063134193.1  leucine-rich repeat-containing protein 36 isoform X2

  3. XM_063278125.1 → XP_063134195.1  leucine-rich repeat-containing protein 36 isoform X4

  4. XM_063278124.1 → XP_063134194.1  leucine-rich repeat-containing protein 36 isoform X3

  5. XM_039097830.1 → XP_038953758.1  leucine-rich repeat-containing protein 36 isoform X5

  6. XM_039097831.1 → XP_038953759.1  leucine-rich repeat-containing protein 36 isoform X6

  7. XM_039097832.2 → XP_038953760.1  leucine-rich repeat-containing protein 36 isoform X7

Nucleotide Protein Strain
Heading Accession and Version

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