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Zc3h11a zinc finger CCCH-type containing 11A [ Rattus norvegicus (Norway rat) ]

Gene ID: 360845, updated on 14-Nov-2024

Summary

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Official Symbol
Zc3h11aprovided by RGD
Official Full Name
zinc finger CCCH-type containing 11Aprovided by RGD
Primary source
RGD:1308290
See related
EnsemblRapid:ENSRNOG00000085640 AllianceGenome:RGD:1308290
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1308290
Summary
Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be part of transcription export complex. Orthologous to several human genes including ZC3H11A (zinc finger CCCH-type containing 11A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Lung (RPKM 309.8), Spleen (RPKM 280.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Zc3h11a in Genome Data Viewer
Location:
13q13
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (47625444..47665971, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (45073422..45113901, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (50196042..50234862)

Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103692077 Neighboring gene uncharacterized LOC134481497 Neighboring gene small nuclear ribonucleoprotein polypeptide E Neighboring gene uncharacterized LOC108352533 Neighboring gene NADH:ubiquinone oxidoreductase subunit B10, pseudogene 1 Neighboring gene zinc finger, BED-type containing 6 Neighboring gene uncharacterized LOC120096250 Neighboring gene lymphocyte transmembrane adaptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. The proteins PDIP3 and ZC11A associate with the human TREX complex in an ATP-dependent manner and function in mRNA export. Folco EG, et al. PLoS One, 2012. PMID 22928037, Free PMC Article
  2. The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts. Baltz AG, et al. Mol Cell, 2012 Jun 8. PMID 22681889
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. Castello A, et al. Cell, 2012 Jun 8. PMID 22658674
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in poly(A)+ mRNA export from nucleus ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
part_of transcription export complex ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 11A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001047902.1 → NP_001041367.1  zinc finger CCCH domain-containing protein 11A

    See identical proteins and their annotated locations for NP_001041367.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ480752
    UniProtKB/TrEMBL
    A6IC84, Q0ZFS5
    Conserved Domains (2) summary
    PRK05035
    Location:432 → 686
    PRK05035; electron transport complex protein RnfC; Provisional
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086031.1 Reference GRCr8

    Range
    47625444..47665971 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063272466.1 → XP_063128536.1  zinc finger CCCH domain-containing protein 11A isoform X2

    UniProtKB/TrEMBL
    Q0ZFS5

  2. XM_039090893.2 → XP_038946821.1  zinc finger CCCH domain-containing protein 11A isoform X2

    UniProtKB/TrEMBL
    A6IC84, Q0ZFS5
    Conserved Domains (2) summary
    PRK05035
    Location:432 → 686
    PRK05035; electron transport complex protein RnfC; Provisional
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  3. XM_063272465.1 → XP_063128535.1  zinc finger CCCH domain-containing protein 11A isoform X2

    UniProtKB/TrEMBL
    Q0ZFS5

  4. XM_039090895.2 → XP_038946823.1  zinc finger CCCH domain-containing protein 11A isoform X3

    UniProtKB/TrEMBL
    A6IC84
    Conserved Domains (2) summary
    PRK05035
    Location:431 → 685
    PRK05035; electron transport complex protein RnfC; Provisional
    pfam15663
    Location:1 → 110
    zf-CCCH_3; Zinc-finger containing family

  5. XM_063272467.1 → XP_063128537.1  zinc finger CCCH domain-containing protein 11A isoform X4

  6. XM_039090891.2 → XP_038946819.1  zinc finger CCCH domain-containing protein 11A isoform X1

    UniProtKB/TrEMBL
    A6IC84
    Related
    ENSRNOP00000104143.1, ENSRNOT00000150512.1
    Conserved Domains (2) summary
    PRK05035
    Location:446 → 700
    PRK05035; electron transport complex protein RnfC; Provisional
    pfam15663
    Location:1 → 124
    zf-CCCH_3; Zinc-finger containing family

  7. XM_039090896.2 → XP_038946824.1  zinc finger CCCH domain-containing protein 11A isoform X5

    UniProtKB/TrEMBL
    Q0D2G9
    Conserved Domains (1) summary
    PRK05035
    Location:115 → 369
    PRK05035; electron transport complex protein RnfC; Provisional
Nucleotide Protein Strain
Heading Accession and Version

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