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RGD1562683 RGD1562683 [ Rattus norvegicus (Norway rat) ]

Gene ID: 360700, updated on 27-Nov-2024

Summary

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Official Symbol
RGD1562683provided by RGD
Official Full Name
RGD1562683provided by RGD
Primary source
RGD:1562683
See related
EnsemblRapid:ENSRNOG00000042967 AllianceGenome:RGD:1562683
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See RGD1562683 in Genome Data Viewer
Location:
11q11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (46288721..46303352, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (32803654..32816291, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (33747462..33760100, complement)

Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102549086 Neighboring gene uncharacterized LOC134480977 Neighboring gene microRNA 802 Neighboring gene U4 spliceosomal RNA Neighboring gene SET domain containing 4 Neighboring gene carbonyl reductase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

General protein information

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Preferred Names
uncharacterized protein LOC360700

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108314.1 → NP_001101784.1  uncharacterized protein LOC360700

    See identical proteins and their annotated locations for NP_001101784.1

    Status: PREDICTED

    Source sequence(s)
    CH473989
    UniProtKB/TrEMBL
    A6JLL2, D3ZV08
    Related
    ENSRNOP00000063233.1, ENSRNOT00000065810.3

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086029.1 Reference GRCr8

    Range
    46288721..46303352 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063270614.1 → XP_063126684.1  uncharacterized protein LOC360700 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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