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Vmo1 vitelline membrane outer layer 1 homolog [ Rattus norvegicus (Norway rat) ]

Gene ID: 360553, updated on 9-Dec-2024

Summary

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Official Symbol
Vmo1provided by RGD
Official Full Name
vitelline membrane outer layer 1 homologprovided by RGD
Primary source
RGD:1559861
See related
EnsemblRapid:ENSRNOG00000026508 AllianceGenome:RGD:1559861
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1559861
Summary
Predicted to be active in extracellular space. Orthologous to human VMO1 (vitelline membrane outer layer 1 homolog). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Adrenal (RPKM 8.4), Lung (RPKM 6.3) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Vmo1 in Genome Data Viewer
Location:
10q24
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (55726572..55733432, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (55227944..55234794, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (57120499..57121584, complement)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene C-X-C motif chemokine ligand 16 Neighboring gene zinc finger, MYND-type containing 15 Neighboring gene transmembrane 4 L six family member 5 Neighboring gene glycolipid transfer protein domain containing 2 Neighboring gene chromosome 10 C17orf114 homolog Neighboring gene proteasome 20S subunit beta 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Large-scale proteomics and phosphoproteomics of urinary exosomes. Gonzales PA, et al. J Am Soc Nephrol, 2009 Feb. PMID 19056867, Free PMC Article
  2. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. Principe S, et al. Proteomics, 2013 May. PMID 23533145, Free PMC Article
  3. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. Prunotto M, et al. J Proteomics, 2013 Apr 26. PMID 23376485
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
vitelline membrane outer layer protein 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191823.1 → NP_001178752.1  vitelline membrane outer layer protein 1 homolog precursor

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000010
    UniProtKB/TrEMBL
    D3ZP97
    Related
    ENSRNOP00000034203.4, ENSRNOT00000029421.6
    Conserved Domains (2) summary
    cd00220
    Location:33 → 200
    VMO-I; Vitelline membrane outer layer protein I (VMO-I) domain, VMO-I is one of the proteins found in the outer layer of the vitelline membrane of poultry eggs; VMO-I, lysozyme, and VMO-II are tightly bound to ovomucin; this complex forms the backbone of the ...
    pfam03762
    Location:35 → 199
    VOMI; Vitelline membrane outer layer protein I (VOMI)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    55726572..55733432 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039086320.2 → XP_038942248.1  vitelline membrane outer layer protein 1 homolog isoform X1

    UniProtKB/TrEMBL
    A6HG59
    Conserved Domains (1) summary
    pfam03762
    Location:2 → 136
    VOMI; Vitelline membrane outer layer protein I (VOMI)
Nucleotide Protein Strain
Heading Accession and Version

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