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Pla2g6 phospholipase A2 group VI [ Rattus norvegicus (Norway rat) ]

Gene ID: 360426, updated on 27-Nov-2024

Summary

Official Symbol
Pla2g6provided by RGD
Official Full Name
phospholipase A2 group VIprovided by RGD
Primary source
RGD:628867
See related
EnsemblRapid:ENSRNOG00000012295 AllianceGenome:RGD:628867
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
iPla2; PNPLA9; GVI PLA2; caI-PLA2; iPLA2-beta
Summary
Enables several functions, including ATP-dependent protein binding activity; calcium-independent phospholipase A2 activity; and long-chain fatty acyl-CoA hydrolase activity. Involved in several processes, including cardiolipin acyl-chain remodeling; positive regulation of protein kinase C signaling; and positive regulation of secretion. Predicted to be located in several cellular components, including extracellular space; microtubule cytoskeleton; and nuclear speck. Predicted to be active in mitochondrion. Biomarker of pleurisy. Human ortholog(s) of this gene implicated in dystonia 12; neuroaxonal dystrophy; and neurodegenerative disease (multiple). Orthologous to human PLA2G6 (phospholipase A2 group VI). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Testes (RPKM 165.3), Kidney (RPKM 64.1) and 9 other tissues See more
Orthologs
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Try the new Transcript table

Genomic context

See Pla2g6 in Genome Data Viewer
Location:
7q34
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (112731803..112771978, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (110851378..110891557, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (120519479..120559716, complement)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 16 member 8 Neighboring gene BAR/IMD domain containing adaptor protein 2 like 2 Neighboring gene MAF bZIP transcription factor F Neighboring gene transmembrane protein 184B

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Markers

Clone Names

  • MGC93880

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables 1-alkyl-2-acetylglycerophosphocholine esterase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables ATP-dependent protein binding IDA
Inferred from Direct Assay
more info
PubMed 
enables calcium-dependent phospholipase A2 activity IEA
Inferred from Electronic Annotation
more info
 
enables calcium-independent phospholipase A2 activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables calcium-independent phospholipase A2 activity IDA
Inferred from Direct Assay
more info
PubMed 
enables calcium-independent phospholipase A2 activity IEA
Inferred from Electronic Annotation
more info
 
enables calcium-independent phospholipase A2 activity ISO
Inferred from Sequence Orthology
more info
 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables long-chain fatty acyl-CoA hydrolase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables long-chain fatty acyl-CoA hydrolase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables long-chain fatty acyl-CoA hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables long-chain fatty acyl-CoA hydrolase activity ISO
Inferred from Sequence Orthology
more info
 
enables long-chain fatty acyl-CoA hydrolase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables lysophospholipase activity IEA
Inferred from Electronic Annotation
more info
 
enables lysophospholipase activity ISO
Inferred from Sequence Orthology
more info
 
enables lysophospholipase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables phospholipase A2 activity TAS
Traceable Author Statement
more info
 
enables protein kinase binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables serine hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables serine hydrolase activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in antibacterial humoral response IEA
Inferred from Electronic Annotation
more info
 
involved_in antibacterial humoral response ISO
Inferred from Sequence Orthology
more info
 
involved_in cardiolipin acyl-chain remodeling IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cardiolipin acyl-chain remodeling IDA
Inferred from Direct Assay
more info
PubMed 
involved_in cardiolipin acyl-chain remodeling IEA
Inferred from Electronic Annotation
more info
 
involved_in cardiolipin acyl-chain remodeling ISO
Inferred from Sequence Orthology
more info
 
involved_in cardiolipin acyl-chain remodeling ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in cardiolipin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
involved_in cardiolipin biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
involved_in chemotaxis IEA
Inferred from Electronic Annotation
more info
 
involved_in lipid catabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in maternal process involved in female pregnancy IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in memory IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of synaptic transmission, glutamatergic IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in phosphatidic acid metabolic process ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in phosphatidylcholine catabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in phosphatidylcholine catabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in phosphatidylcholine catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in phosphatidylethanolamine catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in platelet activating factor metabolic process ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of arachidonate secretion IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of arachidonate secretion IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of ceramide biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of ceramide biosynthetic process IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of cytosolic calcium ion concentration IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of exocytosis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of insulin secretion involved in cellular response to glucose stimulus IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of insulin secretion involved in cellular response to glucose stimulus IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of insulin secretion involved in cellular response to glucose stimulus ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of intracellular signal transduction IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of protein phosphorylation IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of release of cytochrome c from mitochondria IDA
Inferred from Direct Assay
more info
PubMed 
involved_in regulation of store-operated calcium channel activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in response to endoplasmic reticulum stress IDA
Inferred from Direct Assay
more info
PubMed 
involved_in urinary bladder smooth muscle contraction IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in vasodilation IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular space ISO
Inferred from Sequence Orthology
more info
 
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
located_in microtubule cytoskeleton ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrial inner membrane TAS
Traceable Author Statement
more info
 
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 
is_active_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 
located_in nuclear speck ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in pseudopodium IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
85/88 kDa calcium-independent phospholipase A2
Names
2-lysophosphatidylcholine acylhydrolase
85 kDa calcium-independent phospholipase A2
intracellular membrane-associated calcium-independent phospholipase A2 beta
palmitoyl-CoA hydrolase
patatin-like phospholipase domain-containing protein 9
phospholipase A2, group VI (cytosolic, calcium-independent)
NP_001005560.1
NP_001257725.1
XP_006242059.1
XP_006242060.1
XP_006242061.1
XP_006242064.1
XP_006242065.1
XP_006242066.1
XP_006242067.1
XP_008763979.1
XP_038935290.1
XP_038935291.1
XP_063119763.1
XP_063119764.1
XP_063119765.1
XP_063119766.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001005560.1NP_001005560.1  85/88 kDa calcium-independent phospholipase A2 isoform 1

    See identical proteins and their annotated locations for NP_001005560.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    BC081916
    UniProtKB/Swiss-Prot
    G3V7M8, P97570, Q66HD1
    UniProtKB/TrEMBL
    A0A8L2R578
    Related
    ENSRNOP00000072104.2, ENSRNOT00000087344.3
    Conserved Domains (5) summary
    cd07212
    Location:481794
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    COG0666
    Location:345419
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:286314
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:156249
    Ank_2; Ankyrin repeats (3 copies)
    cl39094
    Location:103183
    Ank_2; Ankyrin repeats (3 copies)
  2. NM_001270796.1NP_001257725.1  85/88 kDa calcium-independent phospholipase A2 isoform 2

    See identical proteins and their annotated locations for NP_001257725.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    BC081916, JAXUCZ010000007
    UniProtKB/TrEMBL
    A0A8L2R578
    Related
    ENSRNOP00000108803.1, ENSRNOT00000121906.1
    Conserved Domains (4) summary
    cd07212
    Location:426739
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    cd00204
    Location:214370
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:291380
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:286314
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    112731803..112771978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006242002.1XP_006242064.1  85/88 kDa calcium-independent phospholipase A2 isoform X4

    See identical proteins and their annotated locations for XP_006242064.1

    UniProtKB/TrEMBL
    A0A8L2R578
    Conserved Domains (5) summary
    cd07212
    Location:505818
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    COG0666
    Location:345419
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:214370
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:291380
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:286314
    ANK; ANK repeat [structural motif]
  2. XM_006242003.1XP_006242065.1  85/88 kDa calcium-independent phospholipase A2 isoform X4

    See identical proteins and their annotated locations for XP_006242065.1

    UniProtKB/TrEMBL
    A0A8L2R578
    Conserved Domains (5) summary
    cd07212
    Location:505818
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    COG0666
    Location:345419
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:214370
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:291380
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:286314
    ANK; ANK repeat [structural motif]
  3. XM_006242004.3XP_006242066.1  85/88 kDa calcium-independent phospholipase A2 isoform X4

    See identical proteins and their annotated locations for XP_006242066.1

    UniProtKB/TrEMBL
    A0A8L2R578
    Conserved Domains (5) summary
    cd07212
    Location:505818
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    COG0666
    Location:345419
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:214370
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:291380
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:286314
    ANK; ANK repeat [structural motif]
  4. XM_063263695.1XP_063119765.1  85/88 kDa calcium-independent phospholipase A2 isoform X9

    UniProtKB/Swiss-Prot
    G3V7M8, P97570, Q66HD1
  5. XM_063263694.1XP_063119764.1  85/88 kDa calcium-independent phospholipase A2 isoform X8

    UniProtKB/TrEMBL
    A0A8L2Q8C9
    Related
    ENSRNOP00000016827.6, ENSRNOT00000016827.8
  6. XM_063263693.1XP_063119763.1  85/88 kDa calcium-independent phospholipase A2 isoform X6

  7. XM_006241998.5XP_006242060.1  85/88 kDa calcium-independent phospholipase A2 isoform X2

    See identical proteins and their annotated locations for XP_006242060.1

    UniProtKB/TrEMBL
    A0A8L2R578
    Conserved Domains (5) summary
    cd07212
    Location:523836
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    COG0666
    Location:363437
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:232388
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:309398
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:304332
    ANK; ANK repeat [structural motif]
  8. XM_008765757.4XP_008763979.1  85/88 kDa calcium-independent phospholipase A2 isoform X5

    UniProtKB/TrEMBL
    A0A8L2R578
    Conserved Domains (4) summary
    cd07212
    Location:487800
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    cd00204
    Location:251407
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:328417
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:323351
    ANK; ANK repeat [structural motif]
  9. XM_006241997.5XP_006242059.1  85/88 kDa calcium-independent phospholipase A2 isoform X1

    UniProtKB/TrEMBL
    A0A8L2R578
    Related
    ENSRNOP00000100746.1, ENSRNOT00000153317.1
    Conserved Domains (5) summary
    cd07212
    Location:542855
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    COG0666
    Location:382456
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:251407
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:328417
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:323351
    ANK; ANK repeat [structural motif]
  10. XM_006242005.5XP_006242067.1  85/88 kDa calcium-independent phospholipase A2 isoform X7

    UniProtKB/TrEMBL
    A0A8L2R578
    Conserved Domains (4) summary
    cd07212
    Location:463776
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    cd00204
    Location:251407
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:328417
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:323351
    ANK; ANK repeat [structural motif]
  11. XM_006241999.5XP_006242061.1  85/88 kDa calcium-independent phospholipase A2 isoform X3

    UniProtKB/TrEMBL
    A0A8L2Q8G5, A0A8L2R578
    Related
    ENSRNOP00000017104.5, ENSRNOT00000017108.7
    Conserved Domains (5) summary
    cd07212
    Location:518831
    Pat_PNPLA9; Patatin-like phospholipase domain containing protein 9
    COG0666
    Location:382456
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:251407
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:328417
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:323351
    ANK; ANK repeat [structural motif]
  12. XM_039079363.2XP_038935291.1  85/88 kDa calcium-independent phospholipase A2 isoform X11

    Conserved Domains (4) summary
    PLN03192
    Location:324509
    PLN03192; Voltage-dependent potassium channel; Provisional
    sd00045
    Location:323351
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:193286
    Ank_2; Ankyrin repeats (3 copies)
    cl39094
    Location:140220
    Ank_2; Ankyrin repeats (3 copies)
  13. XM_039079362.2XP_038935290.1  85/88 kDa calcium-independent phospholipase A2 isoform X10

    Conserved Domains (4) summary
    COG0666
    Location:382456
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:323351
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:193286
    Ank_2; Ankyrin repeats (3 copies)
    cl39094
    Location:140220
    Ank_2; Ankyrin repeats (3 copies)
  14. XM_063263696.1XP_063119766.1  85/88 kDa calcium-independent phospholipase A2 isoform X11

RNA

  1. XR_005486652.2 RNA Sequence