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BaraB Baramicin B [ Drosophila melanogaster (fruit fly) ]

Gene ID: 35894, updated on 9-Dec-2024

Summary

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Official Symbol
BaraBprovided by FlyBase
Official Full Name
Baramicin Bprovided by FlyBase
Primary source
FLYBASE:FBgn0033353
Locus tag
Dmel_CG13749
See related
AllianceGenome:FB:FBgn0033353
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG13749; Dmel\CG13749
Summary
Involved in nervous system process. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See BaraB in Genome Data Viewer
Location:
44F9-44F9; 2-59 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (8933423..8934445)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (4820928..4821950)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene aaRS-interacting multifunctional protein 1 Neighboring gene Poly(A)-binding protein-dependent poly(A) ribonuclease 2 Neighboring gene Fanconi anemia complementation group I Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Repeated truncation of a modular antimicrobial peptide gene for neural context. Hanson MA, et al. PLoS Genet, 2022 Jun. PMID 35714143, Free PMC Article
  2. Reproductive status alters transcriptomic response to infection in female Drosophila melanogaster. Short SM, et al. G3 (Bethesda), 2013 May 20. PMID 23550122, Free PMC Article
  3. Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome. MacMillan HA, et al. Sci Rep, 2016 Jun 30. PMID 27357258, Free PMC Article
  4. Transcriptomic analysis of inbreeding depression in cold-sensitive Drosophila melanogaster shows upregulation of the immune response. Vermeulen CJ, et al. J Evol Biol, 2013 Sep. PMID 23944235
  5. Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes. López-Varea A, et al. G3 (Bethesda), 2021 Dec 8. PMID 34599810, Free PMC Article

See all (23) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in nervous system process IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
NOT located_in extracellular space IKR
Inferred from Key Residues
more info
 PubMed 

General protein information

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Preferred Names
baramicin B
Names
BaraB-PB
BaraB-PC
CG13749-PB
CG13749-PC
NP_001400997.1
  • deletion
NP_610428.3
  • deletion

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    8933423..8934445
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_136584.2 → NP_610428.3  baramicin B, isoform B [Drosophila melanogaster]

    Status: REVIEWED

  2. NM_001414061.1 → NP_001400997.1  baramicin B, isoform C [Drosophila melanogaster]

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A1Z7L0 A1Z7L0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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