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ceh-90 Homeobox domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 3565071, updated on 9-Dec-2024

Summary

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Official Symbol
ceh-90
Official Full Name
Homeobox domain-containing protein
Primary source
WormBase:WBGene00010995
Locus tag
CELE_R03E1.4
See related
AllianceGenome:WB:WBGene00010995
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA binding activity. Predicted to be located in nucleus. Is expressed in head muscle; intestine; neurons; and somatic nervous system. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See ceh-90 in Genome Data Viewer
Location:
chromosome: X
Exon count:
7
Sequence:
Chromosome: X; NC_003284.9 (14155115..14157013, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Homeodomain-only protein Neighboring gene Serine/threonine-protein kinase akt-2 Neighboring gene Neurotransmitter-gated ion-channel ligand-binding domain-containing protein Neighboring gene tRNA-Asp

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unique homeobox codes delineate all the neuron classes of C. elegans. Reilly MB, et al. Nature, 2020 Aug. PMID 32814896, Free PMC Article
  2. A 4D single-cell protein atlas of transcription factors delineates spatiotemporal patterning during embryogenesis. Ma X, et al. Nat Methods, 2021 Aug. PMID 34312566
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Homeobox domain-containing protein
NP_001024824.1
  • Partially confirmed by transcript evidence
NP_001338855.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    14155115..14157013 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001351893.1 → NP_001338855.1  Homeobox domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1X7RBN4
    Conserved Domains (1) summary
    cd00086
    Location:5 → 61
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  2. NM_001029653.1 → NP_001024824.1  Homeobox domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024824.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q69YW8
    Conserved Domains (1) summary
    cd00086
    Location:5 → 61
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Nucleotide Protein
Heading Accession and Version

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