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Y87G2A.18 LITAF domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 3564964, updated on 4-Jan-2025

Summary

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Official Symbol
Y87G2A.18
Official Full Name
LITAF domain-containing protein
Primary source
WormBase:WBGene00013604
Locus tag
CELE_Y87G2A.18
See related
AllianceGenome:WB:WBGene00013604
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable zinc ion binding activity. Predicted to be located in endosome membrane and lysosomal membrane. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See Y87G2A.18 in Genome Data Viewer
Location:
chromosome: I
Exon count:
3
Sequence:
Chromosome: I; NC_003279.8 (13512313..13514290, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Protein soem-1 Neighboring gene Peroxisomal coenzyme A diphosphatase ndx-8 Neighboring gene LITAF domain-containing protein Neighboring gene miscRNA Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
  
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
LITAF domain-containing protein
NP_001021834.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    13512313..13514290 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001026663.4 → NP_001021834.1  LITAF domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001021834.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7YXD6
    Conserved Domains (1) summary
    smart00714
    Location:43 → 117
    LITAF; Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins
Nucleotide Protein
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