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Pramel4 PRAME like 4 [ Mus musculus (house mouse) ]

Gene ID: 347710, updated on 27-Nov-2024

Summary

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Official Symbol
Pramel4provided by MGI
Official Full Name
PRAME like 4provided by MGI
Primary source
MGI:MGI:2156377
See related
Ensembl:ENSMUSG00000073724 AllianceGenome:MGI:2156377
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D4Ertd792e
Summary
Is expressed in inner cell mass. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Pramel4 in Genome Data Viewer
Location:
4 E1; 4 77.98 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (143785695..143795897)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (144059125..144069327)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene PRAME family member 6 pseudogene Neighboring gene zinc finger, MYND domain containing 11 pseudogene Neighboring gene PRAME like 60 Neighboring gene STARR-seq mESC enhancer starr_11979 Neighboring gene STARR-seq mESC enhancer starr_11980 Neighboring gene oogenesin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Incomplete reactivation of Oct4-related genes in mouse embryos cloned from somatic nuclei. Bortvin A, et al. Development, 2003 Apr. PMID 12620990
  2. Differences in gene expression between mouse and human for dynamically regulated genes in early embryo. Madissoon E, et al. PLoS One, 2014. PMID 25089626, Free PMC Article
  3. Mbd3, a component of the NuRD co-repressor complex, is required for development of pluripotent cells. Kaji K, et al. Development, 2007 Mar. PMID 17287250
  4. Deterministic and stochastic allele specific gene expression in single mouse blastomeres. Tang F, et al. PLoS One, 2011. PMID 21731673, Free PMC Article
  5. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
preferentially expressed antigen in melanoma like 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001319.4 → NP_001001319.2  preferentially expressed antigen in melanoma like 4 isoform 1

    See identical proteins and their annotated locations for NP_001001319.2

    Status: VALIDATED

    Source sequence(s)
    AK145585, BB838827, BY383853
    Consensus CDS
    CCDS18900.1
    UniProtKB/TrEMBL
    A2ASJ3, E0CXV0, F6SEH0, L7MU15, Q3ULC4
    Related
    ENSMUSP00000089265.6, ENSMUST00000091676.12

  2. NM_001358482.1 → NP_001345411.1  preferentially expressed antigen in melanoma like 4 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK145585, AK163305, BB838827, BY383853

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    143785695..143795897
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006538985.2 → XP_006539048.2  preferentially expressed antigen in melanoma like 4 isoform X1

    UniProtKB/TrEMBL
    L7MU15

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_178248.2: Suppressed sequence

    Description
    NM_178248.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

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