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CG42820 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 34161, updated on 18-Sep-2024

Summary

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Official Symbol
CG42820provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0262002
Locus tag
Dmel_CG42820
See related
AllianceGenome:FB:FBgn0262002
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG13394; Dmel\CG42820
Old locus tag
Dmel_CG13394
Orthologs
all
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Genomic context

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See CG42820 in Genome Data Viewer
Location:
29C1-29C1; 2-32 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (8389881..8392398, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (8389881..8392398, complement)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene small nuclear RNA U6atac Neighboring gene Accessory gland protein 29AB Neighboring gene lectin-29Ca

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene expression profiling of U12-type spliceosome mutant Drosophila reveals widespread changes in metabolic pathways. Pessa HK, et al. PLoS One, 2010 Oct 11. PMID 20949011, Free PMC Article
  2. Comparative genomics of accessory gland protein genes in Drosophila melanogaster and D. pseudoobscura. Wagstaff BJ, et al. Mol Biol Evol, 2005 Apr. PMID 15601888
  3. mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster. Lepennetier G, et al. G3 (Bethesda), 2016 Jun 1. PMID 27172210, Free PMC Article
  4. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208
  5. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein
Names
CG42820-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    8389881..8392398 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_205937.1 → NP_995659.1  uncharacterized protein Dmel_CG42820 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_995659.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7KTH6, Q8MZE5
    Conserved Domains (2) summary
    pfam15994
    Location:46 → 252
    DUF4770; Domain of unknown function (DUF4770)
    pfam15995
    Location:517 → 676
    DUF4771; Domain of unknown function (DUF4771)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7KTH6 Q7KTH6

Gene LinkOut

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