U.S. flag

An official website of the United States government

tfdp2 transcription factor Dp-2 [ Danio rerio (zebrafish) ]

Gene ID: 338204, updated on 15-Dec-2024

Summary

Official Symbol
tfdp2provided by ZNC
Official Full Name
transcription factor Dp-2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030219-104
See related
Ensembl:ENSDARG00000042835 AllianceGenome:ZFIN:ZDB-GENE-030219-104
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
id:ibd2511; wu:fb94f09; zgc:110490
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to contribute to RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of DNA-templated transcription and regulation of cell cycle. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in brain; spinal cord; and telencephalon. Orthologous to human TFDP2 (transcription factor Dp-2). [provided by Alliance of Genome Resources, Dec 2024]
Annotation information
Annotation category: partial on reference assembly
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See tfdp2 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (4421801..4491822, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (4430654..4500675, complement)

Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene endothelin converting enzyme 2b Neighboring gene uncharacterized LOC103908795 Neighboring gene ATPase Na+/K+ transporting subunit beta 3b Neighboring gene uncharacterized LOC137487714 Neighboring gene uncharacterized LOC103908797 Neighboring gene ring finger and FYVE-like domain containing E3 ubiquitin protein ligase Neighboring gene eukaryotic translation initiation factor 4h

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Pathways from PubChem

General gene information

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in nucleus  
located_in nucleus  
part_of transcription regulator complex  

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198208.1 → NP_937851.1  transcription factor Dp-2

    See identical proteins and their annotated locations for NP_937851.1

    Status: PROVISIONAL

    Source sequence(s)
    AY391466
    UniProtKB/TrEMBL
    Q6TNQ1
    Related
    ENSDARP00000129833.1, ENSDART00000155619.3
    Conserved Domains (3) summary
    cd14458
    Location:221 → 267
    DP_DD; coiled coil [structural motif]
    pfam02319
    Location:136 → 216
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam08781
    Location:223 → 362
    DP; Transcription factor DP

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007126.7 Reference GRCz11 Primary Assembly

    Range
    4421801..4491822 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
External link. Please review our privacy policy.