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ORY Occludin-Related Y [ Drosophila melanogaster (fruit fly) ]

Gene ID: 3355174, updated on 9-Dec-2024

Summary

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Official Symbol
ORYprovided by FlyBase
Official Full Name
Occludin-Related Yprovided by FlyBase
Primary source
FLYBASE:FBgn0046323
Locus tag
Dmel_CG40446
See related
AllianceGenome:FB:FBgn0046323
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG40446; Dmel\CG40446; FBgn0046323; ory; Ory
Summary
Predicted to be active in cytoskeleton. Is expressed in adult head and spermatozoon. Human ortholog(s) of this gene implicated in spermatogenic failure 49. Orthologous to human CFAP58 (cilia and flagella associated protein 58). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

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See ORY in Genome Data Viewer
Location:
chromosome: Y
Exon count:
8
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) Y NC_024512.1 (3561745..3618339)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) YHet NW_001848860.1 (229033..271450)

Chromosome Y - NC_024512.1Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Protein phosphatase 1, Y-linked 2 Neighboring gene Coiled-Coils Y

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Ancient evolutionary signals of protein-coding sequences allow the discovery of new genes in the Drosophila melanogaster genome. Casimiro-Soriguer CS, et al. BMC Genomics, 2020 Mar 5. PMID 32138644, Free PMC Article
  2. Extensive introgression of mitochondrial DNA relative to nuclear genes in the Drosophila yakuba species group. Bachtrog D, et al. Evolution, 2006 Feb. PMID 16610321
  3. Surprising differences in the variability of Y chromosomes in African and cosmopolitan populations of Drosophila melanogaster. Larracuente AM, et al. Genetics, 2013 Jan. PMID 23086221, Free PMC Article
  4. Identification of five new genes on the Y chromosome of Drosophila melanogaster. Carvalho AB, et al. Proc Natl Acad Sci U S A, 2001 Nov 6. PMID 11687639, Free PMC Article
  5. Polymorphic Y chromosomes harbor cryptic variation with manifold functional consequences. Lemos B, et al. Science, 2008 Jan 4. PMID 18174442

See all (36) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

mobile_element

  • Loc: 3606948-3608001 mobile_element_type = transposon:1360{}6489

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Occludin-Related Y
Names
CG40446-PD
ORY-PD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_024512.1 Reference assembly

    Range
    3561745..3618339
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001015498.5 → NP_001015498.5  Occludin-Related Y [Drosophila melanogaster]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q5LJN3, Q95V49
    Conserved Domains (2) summary
    COG1196
    Location:182 → 488
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:363 → 686
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q281X4 Q281X4
Q5LJN3 Q5LJN3
Q95V49 Q95V49

Gene LinkOut

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