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si:dkeyp-46h3.2 si:dkeyp-46h3.2 [ Danio rerio (zebrafish) ]

Gene ID: 335411, updated on 4-Jan-2025

Summary

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Official Symbol
si:dkeyp-46h3.2provided by ZNC
Official Full Name
si:dkeyp-46h3.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-7351
See related
Ensembl:ENSDARG00000092498 AllianceGenome:ZFIN:ZDB-GENE-030131-7351
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj09f07; wu:fj09f07
Summary
Predicted to enable carbohydrate binding activity. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See si:dkeyp-46h3.2 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (27586820..27588833, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (27993166..28004610, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene L-rhamnose-binding lectin CSL2-like Neighboring gene si:dkeyp-46h3.3 Neighboring gene cilia and flagella associated protein 90 Neighboring gene adenylate cyclase 2b (brain)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Expressed sequence tag analysis of expression profiles of zebrafish testis and ovary. Zeng S, et al. Gene, 2002 Jul 10. PMID 12234666
  2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC335411

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001114887.2 → NP_001108359.2  uncharacterized protein LOC335411 precursor

    Status: VALIDATED

    Source sequence(s)
    EH445739, EH534347
    UniProtKB/TrEMBL
    A0A8M1NHU7, A3KQ79
    Related
    ENSDARP00000105057.2, ENSDART00000121643.3
    Conserved Domains (1) summary
    pfam02140
    Location:146 → 227
    Gal_Lectin; Galactose binding lectin domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    27586820..27588833 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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