synj2bp synaptojanin 2 binding protein [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: synj2bpprovided by ZNC
Official Full Name: synaptojanin 2 binding proteinprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-6531
See related: Ensembl:ENSDARG00000028321 AllianceGenome:ZFIN:ZDB-GENE-030131-6531
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fa14c06; zgc:56207; wu:fa14c06
Summary: Predicted to be located in membrane. Orthologous to human SYNJ2BP (synaptojanin 2 binding protein). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 13

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	13	NC_007124.7 (36556833..36566252, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	13	NC_007124.6 (36431001..36440420, complement)

Chromosome 13 - NC_007124.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc71a11.y1 (e-PCR)
- UniSTS:194335

fa14c06.s1 (e-PCR)
- UniSTS:202380

Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: synaptojanin-2-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199917.1 → NP_956211.1 synaptojanin-2-binding protein

See identical proteins and their annotated locations for NP_956211.1

Status: PROVISIONAL

Source sequence(s)

BC045991

UniProtKB/TrEMBL

A0A8M1PG36, Q7ZV59

Related

ENSDARP00000033740.6, ENSDART00000030133.7

Conserved Domains (1) summary

cd00992
Location:17 → 97

PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...