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tgm1l6 transglutaminase 1-like 6 [ Danio rerio (zebrafish) ]

Gene ID: 334438, updated on 9-Dec-2024

Summary

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Official Symbol
tgm1l6provided by ZNC
Official Full Name
transglutaminase 1-like 6provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-6370
See related
AllianceGenome:ZFIN:ZDB-GENE-030131-6370
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fi67a10; wu:fi67a10; si:ch1073-138d10.2
Summary
Predicted to enable protein-glutamine gamma-glutamyltransferase activity. Predicted to be involved in nervous system development. Predicted to act upstream of or within keratinization and peptide cross-linking. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See tgm1l6 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (40214123..40227392)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (40304779..40318137, complement)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene G protein signaling modulator 2, like Neighboring gene transglutaminase 1 like 2 Neighboring gene transglutaminase 1 like 3 Neighboring gene terminal nucleotidyltransferase 5Ab Neighboring gene ELOVL fatty acid elongase 4b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Metabolism disruption analysis of zebrafish larvae in response to BPA and BPA analogs based on RNA-Seq technique. Qiu W, et al. Ecotoxicol Environ Saf, 2019 Jun 15. PMID 30826544
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables protein-glutamine gamma-glutamyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within keratinization IEA
Inferred from Electronic Annotation
more info
  
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within peptide cross-linking IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein-glutamine gamma-glutamyltransferase K

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    40214123..40227392
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021470040.2 → XP_021325715.1  protein-glutamine gamma-glutamyltransferase K isoform X1

    UniProtKB/TrEMBL
    A0A8M9PX16
    Conserved Domains (3) summary
    smart00460
    Location:401 → 492
    TGc; Transglutaminase/protease-like homologues
    pfam00868
    Location:137 → 256
    Transglut_N; Transglutaminase family
    pfam00927
    Location:731 → 819
    Transglut_C; Transglutaminase family, C-terminal ig like domain

  2. XM_009297092.4 → XP_009295367.1  protein-glutamine gamma-glutamyltransferase K isoform X2

    UniProtKB/TrEMBL
    A0A8M3AYS7
    Conserved Domains (3) summary
    smart00460
    Location:400 → 491
    TGc; Transglutaminase/protease-like homologues
    pfam00868
    Location:137 → 254
    Transglut_N; Transglutaminase family
    pfam00927
    Location:730 → 818
    Transglut_C; Transglutaminase family, C-terminal ig like domain
Nucleotide Protein Strain
Heading Accession and Version

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