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AI593442 expressed sequence AI593442 [ Mus musculus (house mouse) ]

Gene ID: 330941, updated on 27-Nov-2024

Summary

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Official Symbol
AI593442provided by MGI
Official Full Name
expressed sequence AI593442provided by MGI
Primary source
MGI:MGI:2143099
See related
Ensembl:ENSMUSG00000078307 AllianceGenome:MGI:2143099
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
E130102D23
Summary
Predicted to be located in membrane. Is expressed in ear; nervous system; and urinary system. Orthologous to human C11orf87 (chromosome 11 open reading frame 87). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in cortex adult (RPKM 20.0), frontal lobe adult (RPKM 11.1) and 5 other tissues See more
Orthologs
human all
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Genomic context

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See AI593442 in Genome Data Viewer
Location:
9 A5.3; 9 29.12 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (52584332..52593434, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (52673032..52682134, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 33125 Neighboring gene predicted gene, 33210 Neighboring gene STARR-seq mESC enhancer starr_24137 Neighboring gene STARR-seq mESC enhancer starr_24138 Neighboring gene predicted gene 1715 Neighboring gene STARR-seq mESC enhancer starr_24139 Neighboring gene predicted gene, 53523 Neighboring gene predicted gene, 39339

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Molecular mapping of developing dorsal horn-enriched genes by microarray and dorsal/ventral subtractive screening. Li MZ, et al. Dev Biol, 2006 Apr 15. PMID 16516881
  2. Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Bedogni F, et al. Front Mol Neurosci, 2021. PMID 34321999, Free PMC Article
  3. GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Visel A, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681479, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Clone Names

  • MGC130101

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein C11orf87 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001286641.1 → NP_001273570.1  uncharacterized protein C11orf87 homolog precursor

    See identical proteins and their annotated locations for NP_001273570.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK033979, AK053489, BC109328, CJ105950, CT010440
    Consensus CDS
    CCDS52795.1
    UniProtKB/Swiss-Prot
    Q32M26, Q8CC42
    Related
    ENSMUSP00000149532.2, ENSMUST00000213937.2

  2. NM_178906.5 → NP_849237.2  uncharacterized protein C11orf87 homolog precursor

    See identical proteins and their annotated locations for NP_849237.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK033979, AK053489, BC109328, CT010440
    Consensus CDS
    CCDS52795.1
    UniProtKB/Swiss-Prot
    Q32M26, Q8CC42
    Related
    ENSMUSP00000096365.3, ENSMUST00000098768.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    52584332..52593434 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006510458.4 → XP_006510521.1  uncharacterized protein C11orf87 homolog isoform X1

    See identical proteins and their annotated locations for XP_006510521.1

    UniProtKB/Swiss-Prot
    Q32M26, Q8CC42

  2. XM_030244429.2 → XP_030100289.1  uncharacterized protein C11orf87 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q32M26, Q8CC42

  3. XM_011242565.4 → XP_011240867.1  uncharacterized protein C11orf87 homolog isoform X1

    See identical proteins and their annotated locations for XP_011240867.1

    UniProtKB/Swiss-Prot
    Q32M26, Q8CC42

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_177907.2: Suppressed sequence

    Description
    NM_177907.2: This RefSeq was permanently suppressed because it is primarily UTR sequence.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q32M26.1 GenPept UniProtKB/Swiss-Prot:Q32M26

Gene LinkOut

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