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si:ch1073-224n8.1 si:ch1073-224n8.1 [ Danio rerio (zebrafish) ]

Gene ID: 327438, updated on 9-Dec-2024

Summary

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Official Symbol
si:ch1073-224n8.1provided by ZNC
Official Full Name
si:ch1073-224n8.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5649
See related
Ensembl:ENSDARG00000104485 AllianceGenome:ZFIN:ZDB-GENE-030131-5649
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fi11a05; wu:fi11a05
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See si:ch1073-224n8.1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (37504310..37510887)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (36904134..36910746)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene kelch-like family member 13 Neighboring gene uncharacterized LOC137495610 Neighboring gene leucine-rich repeat neuronal protein 4 Neighboring gene latent transforming growth factor beta binding protein 3 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene transfer RNA methionine (anticodon CAU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC327438; uncharacterized protein si:ch1073-224n8.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    37504310..37510887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001921528.6 → XP_001921563.1  uncharacterized protein si:ch1073-224n8.1

    UniProtKB/TrEMBL
    A0A0R4IX00, A0A8M1QV16
    Related
    ENSDARP00000140978.1, ENSDART00000165465.2
    Conserved Domains (4) summary
    COG5048
    Location:389 → 453
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:393 → 413
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:405 → 428
    zf-H2C2_2; Zinc-finger double domain
    cl19880
    Location:373 → 418
    ROS_MUCR; ROS/MUCR transcriptional regulator protein
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials