cntn5 contactin 5 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: cntn5provided by ZNC
Official Full Name: contactin 5provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-5640
See related: Ensembl:ENSDARG00000021584 AllianceGenome:ZFIN:ZDB-GENE-030131-5640
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fi09g01; zgc:55318; wu:fi09g01
Summary: Predicted to act upstream of or within cell adhesion. Predicted to be located in plasma membrane and side of membrane. Predicted to be active in neuron projection. Is expressed in olfactory pit and telencephalon. Orthologous to human CNTN5 (contactin 5). [provided by Alliance of Genome Resources, Jan 2025]
Annotation information: Annotation category: partial on reference assembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 18

Exon count:: 23

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	18	NC_007129.7 (42150949..42408365, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	18	NC_007129.6 (42151907..42409461, complement)

Chromosome 18 - NC_007129.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell adhesion	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in neuron projection	IBA Inferred from Biological aspect of Ancestor more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info
located_in side of membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: contactin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199804.1 → NP_956098.1 contactin-5

See identical proteins and their annotated locations for NP_956098.1

Status: PROVISIONAL

Source sequence(s)

BC045307

UniProtKB/Swiss-Prot

Q7ZW34

Related

ENSDARP00000089412.4, ENSDART00000098641.5

Conserved Domains (4) summary

smart00410
Location:265 → 344

IG_like; Immunoglobulin like

cd00063
Location:627 → 722

FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

pfam07679
Location:438 → 524

I-set; Immunoglobulin I-set domain

cl11960
Location:56 → 149

Ig; Immunoglobulin domain