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CG5800 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 32742, updated on 9-Dec-2024

Summary

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Official Symbol
CG5800provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0030855
Locus tag
Dmel_CG5800
See related
AllianceGenome:FB:FBgn0030855
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
cg5800; Dmel\CG5800; DmRH14
Summary
Predicted to enable RNA helicase activity. Involved in larval somatic muscle development. Predicted to be active in nucleus. Is expressed in several structures, including adult fat body; embryonic/larval midgut primordium; larval muscle cell; mesoderm; and visceral mesoderm derivative. Orthologous to human DDX10 (DEAD-box helicase 10). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG5800 in Genome Data Viewer
Location:
16B10-16B10; 1-57 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (17636281..17639003)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (17530314..17533036)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene NADH dehydrogenase (ubiquinone) 24 kDa subunit Neighboring gene uncharacterized protein Neighboring gene Rho GTPase activating protein p190 Neighboring gene Integrator 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rapid and efficient generation of GFP-knocked-in Drosophila by the CRISPR-Cas9-mediated genome editing. Kina H, et al. Dev Growth Differ, 2019 May. PMID 31037730
  2. Evolution of intron/exon structure of DEAD helicase family genes in Arabidopsis, Caenorhabditis, and Drosophila. Boudet N, et al. Genome Res, 2001 Dec. PMID 11731501, Free PMC Article
  3. RNA silencing in the antiviral innate immune defence--role of DEAD-box RNA helicases. Ulvila J, et al. Scand J Immunol, 2010 Mar. PMID 20415780
  4. Extensive use of RNA-binding proteins in Drosophila sensory neuron dendrite morphogenesis. Olesnicky EC, et al. G3 (Bethesda), 2014 Feb 19. PMID 24347626, Free PMC Article
  5. New negative feedback regulators of Egfr signaling in Drosophila. Butchar JP, et al. Genetics, 2012 Aug. PMID 22595244, Free PMC Article

See all (40) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables RNA helicase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in larval somatic muscle development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in rRNA processing IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG5800-PA
NP_573230.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    17636281..17639003
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_133002.2 → NP_573230.1  uncharacterized protein Dmel_CG5800 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_573230.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VX34
    Related
    FBpp0074227
    Conserved Domains (4) summary
    PRK01297
    Location:2 → 471
    PRK01297; ATP-dependent RNA helicase RhlB; Provisional
    cd00079
    Location:311 → 437
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:74 → 277
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam13959
    Location:474 → 530
    DUF4217; Domain of unknown function (DUF4217)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VX34 Q9VX34

Gene LinkOut

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