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ccdc28a coiled-coil domain containing 28A [ Danio rerio (zebrafish) ]

Gene ID: 326808, updated on 9-Dec-2024

Summary

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Official Symbol
ccdc28aprovided by ZNC
Official Full Name
coiled-coil domain containing 28Aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5007
See related
Ensembl:ENSDARG00000022983 AllianceGenome:ZFIN:ZDB-GENE-030131-5007
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:63962; wu:fe24b05
Summary
Orthologous to several human genes including ECT2L (epithelial cell transforming 2 like). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See ccdc28a in Genome Data Viewer
Location:
chromosome: 17
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (33409038..33416023, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (33456521..33463513, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene zgc:162964 Neighboring gene epithelial cell transforming 2 like Neighboring gene synaptosome associated protein 23.1 Neighboring gene synaptosome associated protein 23.2 Neighboring gene uncharacterized LOC137488121

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Characterization of CCDC28B reveals its role in ciliogenesis and provides insight to understand its modifier effect on Bardet-Biedl syndrome. Cardenas-Rodriguez M, et al. Hum Genet, 2013 Jan. PMID 23015189
  2. Spatio-temporal regulation of Wnt and retinoic acid signaling by tbx16/spadetail during zebrafish mesoderm differentiation. Mueller RL, et al. BMC Genomics, 2010 Sep 9. PMID 20828405, Free PMC Article
  3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 28A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199748.1 → NP_956042.1  coiled-coil domain-containing protein 28A

    See identical proteins and their annotated locations for NP_956042.1

    Status: PROVISIONAL

    Source sequence(s)
    BC053169
    UniProtKB/TrEMBL
    Q7T3C8
    Related
    ENSDARP00000028520.3, ENSDART00000034638.5
    Conserved Domains (1) summary
    pfam13270
    Location:79 → 151
    DUF4061; Domain of unknown function (DUF4061)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    33409038..33416023 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005158720.5 → XP_005158777.1  coiled-coil domain-containing protein 28A isoform X1

    UniProtKB/TrEMBL
    A0A8M2B561
    Related
    ENSDARP00000113435.1, ENSDART00000140149.2
    Conserved Domains (1) summary
    pfam13270
    Location:108 → 180
    DUF4061; Domain of unknown function (DUF4061)
Nucleotide Protein Strain
Heading Accession and Version

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