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slc25a16 solute carrier family 25 member 16 [ Danio rerio (zebrafish) ]

Gene ID: 324578, updated on 4-Jan-2025

Summary

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Official Symbol
slc25a16provided by ZNC
Official Full Name
solute carrier family 25 member 16provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-3299
See related
Ensembl:ENSDARG00000057287 AllianceGenome:ZFIN:ZDB-GENE-030131-3299
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:56187; zgc:77742; wu:fc33c08
Summary
Predicted to enable coenzyme A transmembrane transporter activity. Predicted to be involved in mitochondrial coenzyme A transmembrane transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in mitochondrial inner membrane. Is expressed in several structures, including adaxial cell; alar plate midbrain region; immature eye; intestinal bulb; and optic tectum. Orthologous to human SLC25A16 (solute carrier family 25 member 16). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See slc25a16 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (18178018..18195942, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (18047034..18064950, complement)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene WASH complex subunit 2C Neighboring gene arachidonate 5-lipoxygenase a Neighboring gene tet methylcytosine dioxygenase 1 Neighboring gene uncharacterized LOC110440176 Neighboring gene eukaryotic translation initiation factor 4E family member 1c

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. TET2 plays an essential role in erythropoiesis by regulating lineage-specific genes via DNA oxidative demethylation in a zebrafish model. Ge L, et al. Mol Cell Biol, 2014 Mar. PMID 24396069, Free PMC Article
  2. Targeted Gene Expression in Zebrafish Exposed to Chlorpyrifos-Oxon Confirms Phenotype-Specific Mechanisms Leading to Adverse Outcomes. Garcia-Reyero N, et al. Bull Environ Contam Toxicol, 2016 Jun. PMID 27086301, Free PMC Article
  3. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables coenzyme A transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mitochondrial coenzyme A transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in mitochondrial inner membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
solute carrier family 25 member 16
Names
solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205549.1 → NP_991112.1  solute carrier family 25 member 16

    See identical proteins and their annotated locations for NP_991112.1

    Status: PROVISIONAL

    Source sequence(s)
    BC045977
    UniProtKB/TrEMBL
    Q7ZV72
    Related
    ENSDARP00000074352.4, ENSDART00000079902.5
    Conserved Domains (2) summary
    PTZ00169
    Location:25 → 319
    PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
    pfam00153
    Location:21 → 113
    Mito_carr; Mitochondrial carrier protein

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    18178018..18195942 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009307225.4 → XP_009305500.1  solute carrier family 25 member 16 isoform X1

    UniProtKB/TrEMBL
    A0A8M3BEK1, B8A698
    Conserved Domains (2) summary
    PTZ00169
    Location:25 → 319
    PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
    pfam00153
    Location:21 → 113
    Mito_carr; Mitochondrial carrier protein

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394875.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    139812..156241 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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