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xpo4 exportin 4 [ Danio rerio (zebrafish) ]

Gene ID: 324342, updated on 9-Dec-2024

Summary

Official Symbol
xpo4provided by ZNC
Official Full Name
exportin 4provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-3062
See related
Ensembl:ENSDARG00000010281 AllianceGenome:ZFIN:ZDB-GENE-030131-3062
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc26b07; zgc:55678; wu:fc26b07; wu:fi43b10
Summary
Predicted to enable nuclear export signal receptor activity. Predicted to be involved in protein export from nucleus. Predicted to act upstream of or within nuclear transport and protein transport. Predicted to be located in nucleus. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm. Is expressed in several structures, including adaxial cell; alar plate midbrain region; eye; midbrain; and musculature system. Orthologous to human XPO4 (exportin 4). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See xpo4 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (21306902..21357841)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (21496033..21546972)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101884374 Neighboring gene large tumor suppressor kinase 2 Neighboring gene EEF1A lysine methyltransferase 1 Neighboring gene interleukin 17d

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables nuclear export signal receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables nuclear export signal receptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within nuclear transport IEA
Inferred from Electronic Annotation
more info
 
involved_in protein export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
part_of nuclear pore IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_212674.2NP_997839.1  exportin-4

    See identical proteins and their annotated locations for NP_997839.1

    Status: PROVISIONAL

    Source sequence(s)
    BC048882
    UniProtKB/Swiss-Prot
    Q802D3
    Related
    ENSDARP00000112894.1, ENSDART00000138554.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    21306902..21357841
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394749.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    171219..223533
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)