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dnajc5ga DnaJ (Hsp40) homolog, subfamily C, member 5 gamma a [ Danio rerio (zebrafish) ]

Gene ID: 322863, updated on 4-Jan-2025

Summary

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Official Symbol
dnajc5gaprovided by ZNC
Official Full Name
DnaJ (Hsp40) homolog, subfamily C, member 5 gamma aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-1583
See related
Ensembl:ENSDARG00000041896 AllianceGenome:ZFIN:ZDB-GENE-030131-1583
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
dnajc5g; fb75d01; zgc:56703; wu:fb75d01
Summary
Predicted to be located in membrane. Is expressed in blastodisc. Orthologous to human DNAJC5G (DnaJ heat shock protein family (Hsp40) member C5 gamma). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See dnajc5ga in Genome Data Viewer
Location:
chromosome: 20
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (38763953..38787091, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (38861074..38884457, complement)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene urotensin 1 Neighboring gene tripartite motif containing 54 Neighboring gene carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase Neighboring gene si:dkey-221h15.4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. transparent, a gene affecting stripe formation in Zebrafish, encodes the mitochondrial protein Mpv17 that is required for iridophore survival. Krauss J, et al. Biol Open, 2013 Jul 15. PMID 23862018, Free PMC Article
  2. Genome wide analysis of 3' UTR sequence elements and proteins regulating mRNA stability during maternal-to-zygotic transition in zebrafish. Vejnar CE, et al. Genome Res, 2019 Jul. PMID 31227602, Free PMC Article
  3. The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafish. Ferg M, et al. EMBO J, 2007 Sep 5. PMID 17703193, Free PMC Article
  4. Functional Characterization and Expression Analyses Show Differential Roles of Maternal and Zygotic Dgcr8 in Early Embryonic Development. Zhu Z, et al. Front Genet, 2020. PMID 32296464, Free PMC Article
  5. Protein palmitoylation activate zygotic gene expression during the maternal-to-zygotic transition. Du Z, et al. Biochem Biophys Res Commun, 2016 Jun 24. PMID 27235108

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DnaJ (Hsp40) homolog, subfamily C, member 5 gamma a; dnaJ (Hsp40) homolog, subfamily C, member 5 gamma a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199623.1 → NP_955917.1  DnaJ (Hsp40) homolog, subfamily C, member 5 gamma a

    See identical proteins and their annotated locations for NP_955917.1

    Status: PROVISIONAL

    Source sequence(s)
    BC049534
    UniProtKB/TrEMBL
    A0A8M1P9U6, Q7ZW85
    Conserved Domains (2) summary
    COG0484
    Location:21 → 90
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    pfam00226
    Location:21 → 83
    DnaJ; DnaJ domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    38763953..38787091 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005160813.5 → XP_005160870.1  dnaJ (Hsp40) homolog, subfamily C, member 5 gamma a isoform X1

    See identical proteins and their annotated locations for XP_005160870.1

    UniProtKB/TrEMBL
    A0A8M1P9U6, Q7ZW85
    Related
    ENSDARP00000116467.1, ENSDART00000136771.3
    Conserved Domains (2) summary
    COG0484
    Location:21 → 90
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    pfam00226
    Location:21 → 83
    DnaJ; DnaJ domain

  2. XM_009294887.4 → XP_009293162.1  dnaJ (Hsp40) homolog, subfamily C, member 5 gamma a isoform X3

    UniProtKB/TrEMBL
    A0A8M3ALQ9
    Conserved Domains (2) summary
    COG0484
    Location:21 → 90
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    pfam00226
    Location:21 → 83
    DnaJ; DnaJ domain

  3. XM_005160814.5 → XP_005160871.1  dnaJ (Hsp40) homolog, subfamily C, member 5 gamma a isoform X2

    See identical proteins and their annotated locations for XP_005160871.1

    UniProtKB/TrEMBL
    A0A8M2B7R4, U3JAA1
    Related
    ENSDARP00000127166.1, ENSDART00000152913.3
    Conserved Domains (2) summary
    COG0484
    Location:21 → 90
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    pfam00226
    Location:21 → 83
    DnaJ; DnaJ domain

  4. XM_005160815.5 → XP_005160872.1  dnaJ (Hsp40) homolog, subfamily C, member 5 gamma a isoform X2

    See identical proteins and their annotated locations for XP_005160872.1

    UniProtKB/TrEMBL
    A0A8M2B7R4, U3JAA1
    Conserved Domains (2) summary
    COG0484
    Location:21 → 90
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    pfam00226
    Location:21 → 83
    DnaJ; DnaJ domain
Nucleotide Protein
Heading Accession and Version

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