U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ephx5 epoxide hydrolase 5 [ Danio rerio (zebrafish) ]

Gene ID: 322331, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
ephx5provided by ZNC
Official Full Name
epoxide hydrolase 5provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-1050
See related
AllianceGenome:ZFIN:ZDB-GENE-030131-1050
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ephx1; ephx1l; wu:fb58c02; wu:fb62g01
Summary
Predicted to enable cis-stilbene-oxide hydrolase activity. Predicted to act upstream of or within lipid metabolic process and response to toxic substance. Predicted to be located in endoplasmic reticulum membrane. [provided by Alliance of Genome Resources, Jan 2025]
Annotation information
Annotation category: suggests misassembly
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ephx5 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (33688350..33696076)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (33339770..33343339)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137487422 Neighboring gene MAD2L1 binding protein Neighboring gene mono-ADP ribosylhydrolase 2 Neighboring gene uncharacterized LOC137487423 Neighboring gene cystatin C (amyloid angiopathy and cerebral hemorrhage) Neighboring gene fibronectin leucine rich transmembrane 3

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
  
enables cis-stilbene-oxide hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables ether hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to toxic substance IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
epoxide hydrolase 1
Names
epoxide hydrolase 1, like
XP_005173080.4
XP_021336553.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    33688350..33696076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021480878.2 → XP_021336553.1  epoxide hydrolase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M9QAE5
    Conserved Domains (2) summary
    pfam00561
    Location:166 → 396
    Abhydrolase_1; alpha/beta hydrolase fold
    pfam06441
    Location:72 → 180
    EHN; Epoxide hydrolase N terminus

  2. XM_005173023.5 → XP_005173080.4  epoxide hydrolase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M2BK97
    Conserved Domains (2) summary
    pfam00561
    Location:166 → 396
    Abhydrolase_1; alpha/beta hydrolase fold
    pfam06441
    Location:72 → 180
    EHN; Epoxide hydrolase N terminus
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools