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ilf3b interleukin enhancer binding factor 3b [ Danio rerio (zebrafish) ]

Gene ID: 321868, updated on 9-Dec-2024

Summary

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Official Symbol
ilf3bprovided by ZNC
Official Full Name
interleukin enhancer binding factor 3bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-587
See related
Ensembl:ENSDARG00000105177 AllianceGenome:ZFIN:ZDB-GENE-030131-587
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ilf3; zgc:77030; wu:fb37d07; wu:fb94b02
Summary
Predicted to enable double-stranded RNA binding activity; mRNA 3'-UTR AU-rich region binding activity; and single-stranded RNA binding activity. Predicted to be involved in spliceosome-depend formation of circular RNA. Predicted to act upstream of or within defense response to virus. Predicted to be located in cytoplasm and nucleolus. Orthologous to human ILF3 (interleukin enhancer binding factor 3). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See ilf3b in Genome Data Viewer
Location:
chromosome: 3
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (13842581..13877697)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (13692693..13727851)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene WIZ zinc finger b Neighboring gene prostaglandin E receptor 1b (subtype EP1) Neighboring gene phenylalanyl-tRNA synthetase subunit alpha Neighboring gene synaptonemal complex central element protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Analysis of protein expression in zebrafish during gonad differentiation by targeted proteomics. Groh KJ, et al. Gen Comp Endocrinol, 2013 Nov 1. PMID 23968773
  2. RNA-Seq analysis in mutant zebrafish reveals role of U1C protein in alternative splicing regulation. Rösel TD, et al. EMBO J, 2011 May 18. PMID 21468032, Free PMC Article
  3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables double-stranded RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA 3'-UTR AU-rich region binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables single-stranded RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to virus IEA
Inferred from Electronic Annotation
more info
  
involved_in spliceosome-depend formation of circular RNA ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
interleukin enhancer-binding factor 3 homolog
Names
interleukin enhancer binding factor 3, 90kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_212599.1 → NP_997764.1  interleukin enhancer-binding factor 3 homolog

    See identical proteins and their annotated locations for NP_997764.1

    Status: PROVISIONAL

    Source sequence(s)
    BC067172
    UniProtKB/Swiss-Prot
    Q6NXA4, Q802W3
    Related
    ENSDARP00000140809.1, ENSDART00000162317.2
    Conserved Domains (2) summary
    smart00572
    Location:90 → 344
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:406 → 470
    DSRM; Double-stranded RNA binding motif

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    13842581..13877697
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068215805.1 → XP_068071906.1  interleukin enhancer-binding factor 3 homolog isoform X8

    UniProtKB/TrEMBL
    A0A8M3AXS5

  2. XM_005163739.5 → XP_005163796.1  interleukin enhancer-binding factor 3 homolog isoform X2

    UniProtKB/Swiss-Prot
    Q6NXA4, Q802W3
    UniProtKB/TrEMBL
    A0A8M2BAV0
    Conserved Domains (2) summary
    smart00572
    Location:90 → 344
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:406 → 470
    DSRM; Double-stranded RNA binding motif

  3. XM_005163741.4 → XP_005163798.1  interleukin enhancer-binding factor 3 homolog isoform X1

    UniProtKB/Swiss-Prot
    Q6NXA4, Q802W3
    UniProtKB/TrEMBL
    A0A8M2BB13
    Conserved Domains (2) summary
    smart00572
    Location:90 → 343
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:405 → 469
    DSRM; Double-stranded RNA binding motif

  4. XM_068215791.1 → XP_068071892.1  interleukin enhancer-binding factor 3 homolog isoform X3

    UniProtKB/Swiss-Prot
    Q6NXA4, Q802W3

  5. XM_005163740.5 → XP_005163797.1  interleukin enhancer-binding factor 3 homolog isoform X4

    UniProtKB/TrEMBL
    A0A8M2BAZ5
    Conserved Domains (2) summary
    smart00572
    Location:90 → 344
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:406 → 470
    DSRM; Double-stranded RNA binding motif

  6. XM_068215801.1 → XP_068071902.1  interleukin enhancer-binding factor 3 homolog isoform X6

  7. XM_005163742.5 → XP_005163799.1  interleukin enhancer-binding factor 3 homolog isoform X5

    UniProtKB/TrEMBL
    A0A8M2BAW0
    Conserved Domains (2) summary
    smart00572
    Location:90 → 343
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:405 → 469
    DSRM; Double-stranded RNA binding motif

  8. XM_068215804.1 → XP_068071905.1  interleukin enhancer-binding factor 3 homolog isoform X7

  9. XM_068215806.1 → XP_068071907.1  interleukin enhancer-binding factor 3 homolog isoform X8

    UniProtKB/TrEMBL
    A0A8M3AXS5

  10. XM_068215807.1 → XP_068071908.1  interleukin enhancer-binding factor 3 homolog isoform X8

    UniProtKB/TrEMBL
    A0A8M3AXS5
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NXA4.2 GenPept UniProtKB/Swiss-Prot:Q6NXA4

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