U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Sclp sclp [ Drosophila melanogaster (fruit fly) ]

Gene ID: 32156, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
Sclpprovided by FlyBase
Official Full Name
sclpprovided by FlyBase
Primary source
FLYBASE:FBgn0030357
Locus tag
Dmel_CG2471
See related
AllianceGenome:FB:FBgn0030357
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG2471; CT8171; Dmel\CG2471; dSCLP
Summary
Involved in muscle system process. Is expressed in larval somatic muscle cell. Orthologous to human LRRC20 (leucine rich repeat containing 20). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Sclp in Genome Data Viewer
Location:
10F6-10F7; 1-37 cM
Exon count:
9
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (11920004..11924662, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (11814037..11818695, complement)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR32661 Neighboring gene long non-coding RNA:CR43157 Neighboring gene long non-coding RNA:CR32660 Neighboring gene PDZ domain containing 8 Neighboring gene cacophony

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Single-cell transcriptome sequencing reveals Wolbachia-mediated modification in early stages of Drosophila spermatogenesis. Dou W, et al. Proc Biol Sci, 2023 Jan 11. PMID 36629101, Free PMC Article
  2. Wispy, the Drosophila homolog of GLD-2, is required during oogenesis and egg activation. Cui J, et al. Genetics, 2008 Apr. PMID 18430932, Free PMC Article
  3. Differences in Postmating Transcriptional Responses between Conspecific and Heterospecific Matings in Drosophila. Ahmed-Braimah YH, et al. Mol Biol Evol, 2021 Mar 9. PMID 33035303, Free PMC Article
  4. Germline-dependent gene expression in distant non-gonadal somatic tissues of Drosophila. Parisi MJ, et al. BMC Genomics, 2010 Jun 1. PMID 20515475, Free PMC Article
  5. Computational identification of Ftz/Ftz-F1 downstream target genes. Bowler T, et al. Dev Biol, 2006 Nov 1. PMID 16996052

See all (32) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in muscle system process IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in muscle system process IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
sclp
Names
CG2471-PA
CG2471-PB
CG2471-PC
Sclp-PA
Sclp-PB
Sclp-PC

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    11920004..11924662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001272546.1 → NP_001259475.1  sclp, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001259475.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H0RNK3
    Conserved Domains (3) summary
    cd00116
    Location:77 → 232
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:93 → 115
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:140 → 198
    LRR_8; Leucine rich repeat

  2. NM_132542.3 → NP_572770.1  sclp, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_572770.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VYS0
    Related
    FBpp0073430
    Conserved Domains (3) summary
    cd00116
    Location:77 → 232
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:93 → 115
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:140 → 198
    LRR_8; Leucine rich repeat

  3. NM_001169256.1 → NP_001162727.1  sclp, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001162727.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    C0PV74
    Conserved Domains (2) summary
    sd00033
    Location:20 → 41
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:66 → 124
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
C0PV74 C0PV74
H0RNK3 H0RNK3
Q9VYS0 Q9VYS0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools