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trappc13 trafficking protein particle complex subunit 13 [ Danio rerio (zebrafish) ]

Gene ID: 321203, updated on 4-Jan-2025

Summary

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Official Symbol
trappc13provided by ZNC
Official Full Name
trafficking protein particle complex subunit 13provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-9775
See related
Ensembl:ENSDARG00000033768 AllianceGenome:ZFIN:ZDB-GENE-030131-9775
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
cb318; sb:cb318; zgc:73187; wu:fa04a08
Summary
Predicted to be part of TRAPPIII protein complex. Is expressed in notochord. Orthologous to human TRAPPC13 (trafficking protein particle complex subunit 13). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See trappc13 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (15340769..15382142)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (15382649..15424023)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene potassium channel, subfamily V, member 2a Neighboring gene pumilio RNA-binding family member 3 Neighboring gene small glutamine rich tetratricopeptide repeat co-chaperone beta Neighboring gene neurolysin (metallopeptidase M3 family) Neighboring gene erbb2 interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
part_of TRAPPIII protein complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
trafficking protein particle complex subunit 13
Names
UPF0533 protein C5orf44 homolog
trafficking protein particle complex 13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001244643.1 → NP_001231572.1  trafficking protein particle complex subunit 13 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    EH451323, EH462199, EH541314, EH553803, EH598931
    UniProtKB/TrEMBL
    A0A0R4IMM3, A0A8M1NZ69
    Related
    ENSDARP00000135625.1, ENSDART00000168909.2
    Conserved Domains (1) summary
    pfam06159
    Location:65 → 298
    DUF974; Protein of unknown function (DUF974)

  2. NM_199538.2 → NP_955832.2  trafficking protein particle complex subunit 13 isoform 2

    See identical proteins and their annotated locations for NP_955832.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon in the coding region compared to variant 1. The resulting protein (isoform 2) is shorter but has the same N- and C-termini compared to isoform 1.
    Source sequence(s)
    EH462199, EH541314, EH553803, EH581545, EH598931
    UniProtKB/Swiss-Prot
    Q6PBY7
    Related
    ENSDARP00000046273.4, ENSDART00000046274.6
    Conserved Domains (1) summary
    pfam06159
    Location:65 → 292
    DUF974; Protein of unknown function (DUF974)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    15340769..15382142
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005155559.5 → XP_005155616.1  trafficking protein particle complex subunit 13 isoform X1

    UniProtKB/TrEMBL
    A0A8M2B295
    Conserved Domains (1) summary
    pfam06159
    Location:65 → 297
    DUF974; Protein of unknown function (DUF974)

  2. XM_005155560.5 → XP_005155617.1  trafficking protein particle complex subunit 13 isoform X2

    UniProtKB/TrEMBL
    A0A8M2B1S2
    Conserved Domains (1) summary
    pfam06159
    Location:65 → 291
    DUF974; Protein of unknown function (DUF974)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6PBY7.2 GenPept UniProtKB/Swiss-Prot:Q6PBY7

Gene LinkOut

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