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Trdv2-2 T cell receptor delta variable 2-2 [ Mus musculus (house mouse) ]

Gene ID: 320913, updated on 9-Dec-2024

Summary

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Official Symbol
Trdv2-2provided by MGI
Official Full Name
T cell receptor delta variable 2-2provided by MGI
Primary source
MGI:MGI:4819748
See related
Ensembl:ENSMUSG00000076866 IMGT/GENE-DB:TRDV2-2; AllianceGenome:MGI:4819748
Gene type
other
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm17015
Summary
Predicted to be involved in immune response. Predicted to be part of immunoglobulin complex. Orthologous to human TRAV38-1 (T cell receptor alpha variable 38-1) and TRAV38-2DV8 (T cell receptor alpha variable 38-2/delta variable 8). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See Trdv2-2 in Genome Data Viewer
Location:
14 C2; 14 27.59 cM
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (54198450..54199059)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (53960993..53961602)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene T cell receptor alpha chain Neighboring gene predicted gene, 30392 Neighboring gene T cell receptor delta variable 2-1 Neighboring gene T cell receptor alpha variable 22 Neighboring gene T cell receptor alpha variable 23 Neighboring gene T cell receptor delta chain Neighboring gene T cell receptor delta variable 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TCR delta gene rearrangements revealed by fine structure of the recombination junction in mice. Kanari Y, et al. Microbiol Immunol, 2003. PMID 14639000
  2. The adult T-cell receptor delta-chain is diverse and distinct from that of fetal thymocytes. Elliott JF, et al. Nature, 1988 Feb 18. PMID 2963227
  3. T cell receptor-gamma and -delta genes preferentially utilized by adult thymocytes for the surface expression. Takagaki Y, et al. J Immunol, 1989 Mar 15. PMID 2784150
  4. IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Giudicelli V, et al. Nucleic Acids Res, 2005 Jan 1. PMID 15608191, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in immune response IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of immunoglobulin complex IBA
Inferred from Biological aspect of Ancestor
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_007044.1 

    Range
    1533527..1534136
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    54198450..54199059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_177291.3: Suppressed sequence

    Description
    NM_177291.3: This RefSeq was permanently suppressed because immunoglobulin and T-cell receptor loci are out of scope for RefSeq transcripts.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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