U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

E030042O20Rik RIKEN cDNA E030042O20 gene [ Mus musculus (house mouse) ]

Gene ID: 320474, updated on 22-Oct-2024

Summary

Go to the top of the page Help
Official Symbol
E030042O20Rikprovided by MGI
Official Full Name
RIKEN cDNA E030042O20 geneprovided by MGI
Primary source
MGI:MGI:2444099
See related
Ensembl:ENSMUSG00000087222 AllianceGenome:MGI:2444099
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Ubiquitous expression in duodenum adult (RPKM 1.7), adrenal adult (RPKM 1.3) and 24 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See E030042O20Rik in Genome Data Viewer
Location:
2 C3; 2 44.76 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (75535206..75548841)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (75706885..75711120)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_04867 Neighboring gene heterogeneous nuclear ribonucleoprotein A3 Neighboring gene STARR-seq mESC enhancer starr_04869 Neighboring gene nuclear factor, erythroid derived 2, like 2 Neighboring gene STARR-positive B cell enhancer ABC_E1590 Neighboring gene STARR-positive B cell enhancer ABC_E4469 Neighboring gene STARR-positive B cell enhancer ABC_E9069 Neighboring gene STARR-seq mESC enhancer starr_04874 Neighboring gene STARR-seq mESC enhancer starr_04876 Neighboring gene STARR-seq mESC enhancer starr_04877 Neighboring gene predicted gene, 34657 Neighboring gene predicted gene 13657 Neighboring gene STARR-positive B cell enhancer mm9_chr2:75624147-75624447 Neighboring gene STARR-positive B cell enhancer ABC_E10116

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_190114.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL772404

  2. NR_190115.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL772404
    Related
    ENSMUST00000135244.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    75535206..75548841
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.