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CG10555 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 31771, updated on 4-Jan-2025

Summary

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Official Symbol
CG10555provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0030034
Locus tag
Dmel_CG10555
See related
AllianceGenome:FB:FBgn0030034
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG10555
Summary
Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in synovial sarcoma. Orthologous to human SS18L2 (SS18 like 2); SS18 (SS18 subunit of BAF chromatin remodeling complex); and SS18L1 (SS18L1 subunit of BAF chromatin remodeling complex). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

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See CG10555 in Genome Data Viewer
Location:
7E6-7E6; 1-23 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (8398940..8404516)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (8292973..8298549)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene Phosphatidylinositol glycan anchor biosynthesis class T Neighboring gene leg arista wing complex Neighboring gene TATA box binding protein-related factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Shep RNA-Binding Capacity Is Required for Antagonism of gypsy Chromatin Insulator Activity. Chen D, et al. G3 (Bethesda), 2019 Mar 7. PMID 30630880, Free PMC Article
  2. Selective sweeps in a 2-locus model for sex-ratio meiotic drive in Drosophila simulans. Derome N, et al. Mol Biol Evol, 2008 Feb. PMID 18071199
  3. BICRA, a SWI/SNF Complex Member, Is Associated with BAF-Disorder Related Phenotypes in Humans and Model Organisms. Barish S, et al. Am J Hum Genet, 2020 Dec 3. PMID 33232675, Free PMC Article
  4. Functional conservation of Rel binding sites in drosophilid genomes. Copley RR, et al. Genome Res, 2007 Sep. PMID 17785540, Free PMC Article
  5. Messenger RNA is a functional component of a chromatin insulator complex. Matzat LH, et al. EMBO Rep, 2013 Oct. PMID 23917615, Free PMC Article

See all (26) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables nuclear receptor coactivator activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables transcription coactivator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG10555-PA
CG10555-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    8398940..8404516
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001298087.1 → NP_001285016.1  uncharacterized protein Dmel_CG10555, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001285016.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W3G1
    Conserved Domains (1) summary
    pfam05030
    Location:141 → 200
    SSXT; SSXT protein (N-terminal region)

  2. NM_132246.3 → NP_572474.2  uncharacterized protein Dmel_CG10555, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_572474.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W3G1
    Related
    FBpp0071122
    Conserved Domains (1) summary
    pfam05030
    Location:141 → 200
    SSXT; SSXT protein (N-terminal region)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5U0Y6 Q5U0Y6
Q95RN5 Q95RN5
Q9W3G1 Q9W3G1

Gene LinkOut

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