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Hmgb4l9 high-mobility group box 4 like 9 [ Rattus norvegicus (Norway rat) ]

Gene ID: 317314, updated on 4-Jan-2025

Summary

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Official Symbol
Hmgb4l9provided by RGD
Official Full Name
high-mobility group box 4 like 9provided by RGD
Primary source
RGD:1561558
See related
EnsemblRapid:ENSRNOG00000080046 AllianceGenome:RGD:1561558
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1561558
Summary
Predicted to enable DNA binding activity, bending. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human HMGB4 (high mobility group box 4). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See Hmgb4l9 in Genome Data Viewer
Location:
Xq36
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (139219567..139222654)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (134184390..134185772)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (158261123..158261953, complement)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120099129 Neighboring gene U6 spliceosomal RNA Neighboring gene small integral membrane protein 10 like 2A Neighboring gene uncharacterized LOC134484173 Neighboring gene integrator complex subunit 6 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA binding, bending IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
high mobility group protein B4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    139219567..139222654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063280544.1 → XP_063136614.1  high mobility group protein B4-like

    UniProtKB/TrEMBL
    A0A8I5ZRF7, A0A8I6A6Y4
    Related
    ENSRNOP00000108247.1, ENSRNOT00000170357.1
Nucleotide Protein Strain
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