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Gin1 gypsy retrotransposon integrase 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 316687, updated on 27-Nov-2024

Summary

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Official Symbol
Gin1provided by RGD
Official Full Name
gypsy retrotransposon integrase 1provided by RGD
Primary source
RGD:1307449
See related
EnsemblRapid:ENSRNOG00000011962 AllianceGenome:RGD:1307449
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1307449
Summary
Predicted to enable nucleic acid binding activity. Predicted to be involved in DNA integration. Orthologous to human GIN1 (gypsy retrotransposon integrase 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Thymus (RPKM 40.0), Adrenal (RPKM 36.3) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Gin1 in Genome Data Viewer
Location:
9q36
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (105740914..105762357, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (98293596..98315155, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (111200285..111220738, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene tumor protein, translationally-controlled 1 pseudogene 6 Neighboring gene potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2-like Neighboring gene peptidylglycine alpha-amidating monooxygenase Neighboring gene diphosphoinositol pentakisphosphate kinase 2 Neighboring gene transfer RNA proline (anticodon AGG) 31 Neighboring gene macrophage immunometabolism regulator

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA integration IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
gypsy retrotransposon integrase-like protein 1
Names
GIN-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025012.1 → NP_001020183.1  gypsy retrotransposon integrase-like protein 1

    See identical proteins and their annotated locations for NP_001020183.1

    Status: PROVISIONAL

    Source sequence(s)
    BC082058
    UniProtKB/Swiss-Prot
    Q66H30
    UniProtKB/TrEMBL
    A6JR80
    Related
    ENSRNOP00000016028.6, ENSRNOT00000016028.9
    Conserved Domains (1) summary
    pfam17921
    Location:65 → 124
    Integrase_H2C2; Integrase zinc binding domain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    105740914..105762357 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039083782.2 → XP_038939710.1  gypsy retrotransposon integrase-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8L2R6L5, A6JR80
    Related
    ENSRNOP00000073007.2, ENSRNOT00000087355.3
    Conserved Domains (1) summary
    pfam17921
    Location:78 → 137
    Integrase_H2C2; Integrase zinc binding domain

  2. XM_063267333.1 → XP_063123403.1  gypsy retrotransposon integrase-like protein 1 isoform X2

  3. XM_039083785.1 → XP_038939713.1  gypsy retrotransposon integrase-like protein 1 isoform X2

    Conserved Domains (1) summary
    cl21549
    Location:9 → 66
    rve; Integrase core domain

  4. XM_039083784.2 → XP_038939712.1  gypsy retrotransposon integrase-like protein 1 isoform X2

    Conserved Domains (1) summary
    cl21549
    Location:9 → 66
    rve; Integrase core domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q66H30.1 GenPept UniProtKB/Swiss-Prot:Q66H30

Gene LinkOut

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