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CG4617 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 31657, updated on 4-Jan-2025

Summary

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Official Symbol
CG4617provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0029936
Locus tag
Dmel_CG4617
See related
AllianceGenome:FB:FBgn0029936
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CC28; Dmel\CG4617
Summary
Is expressed in organism. Orthologous to human HMGXB4 (HMG-box containing 4). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See CG4617 in Genome Data Viewer
Location:
6F5-6F5; 1-19 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (7102555..7104491, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (6996588..6998524, complement)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene Sex lethal Neighboring gene long non-coding RNA:CR46494 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene frizzled 4 Neighboring gene long non-coding RNA:CR45532

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Predictive features of gene expression variation reveal mechanistic link with differential expression. Sigalova OM, et al. Mol Syst Biol, 2020 Aug. PMID 32767663, Free PMC Article
  2. Drosophila domino Exhibits Genetic Interactions with a Wide Spectrum of Chromatin Protein-Encoding Loci. Ellis K, et al. PLoS One, 2015. PMID 26555684, Free PMC Article
  3. A network model of the molecular organization of chromatin in Drosophila. van Bemmel JG, et al. Mol Cell, 2013 Feb 21. PMID 23438860
  4. Conservation of caspase substrates across metazoans suggests hierarchical importance of signaling pathways over specific targets and cleavage site motifs in apoptosis. Crawford ED, et al. Cell Death Differ, 2012 Dec. PMID 22918439, Free PMC Article
  5. Identification of novel Drosophila neural precursor genes using a differential embryonic head cDNA screen. Brody T, et al. Mech Dev, 2002 Apr. PMID 11900973

See all (29) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG4617-PA
CG4617-PC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    7102555..7104491 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_132155.3 → NP_572383.1  uncharacterized protein Dmel_CG4617, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_572383.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q960L5, Q9W3S4
    Related
    FBpp0070978
    Conserved Domains (1) summary
    cd00084
    Location:165 → 218
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...

  2. NM_001272379.1 → NP_001259308.1  uncharacterized protein Dmel_CG4617, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001259308.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q960L5, Q9W3S4
    Conserved Domains (1) summary
    cd00084
    Location:165 → 218
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9W3S4 Q9W3S4

Gene LinkOut

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